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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G567400
Reference: TK1151 Chr: Chr01 Coordinates: 142850428-142851300 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

732 bp · TkA01G567400|TK1151|cDNA

ATGGCATCTTCGATGCTCTATGAAGCTCAGCATCGTTCATCAACTCCAAAAGGATTAGAGTTTAAGGGGTCAACTTCAATGCCTAGGTTGAAGTTCATACAACACAGAAAAAGGTCTCTTTGGTTCTACAGGTTCATGTCAGTGTTTTATGATTACGTCACGGACCTTGGCCTTTGGACTGAAGATATGCGAGTGGAGGCACTTGAACCGGCAGATCTTAACAGCCGTGATCGGGTAGTGGTGGACGTTGGTGGTGGCAT...

CDS

Download CDS FASTA

732 bp · TkA01G567400|TK1151|CDS

ATGGCATCTTCGATGCTCTATGAAGCTCAGCATCGTTCATCAACTCCAAAAGGATTAGAGTTTAAGGGGTCAACTTCAATGCCTAGGTTGAAGTTCATACAACACAGAAAAAGGTCTCTTTGGTTCTACAGGTTCATGTCAGTGTTTTATGATTACGTCACGGACCTTGGCCTTTGGACTGAAGATATGCGAGTGGAGGCACTTGAACCGGCAGATCTTAACAGCCGTGATCGGGTAGTGGTGGACGTTGGTGGTGGCAT...

Protein

Download Protein FASTA

243 aa · TkA01G567400|TK1151|PROTEIN

MASSMLYEAQHRSSTPKGLEFKGSTSMPRLKFIQHRKRSLWFYRFMSVFYDYVTDLGLWTEDMRVEALEPADLNSRDRVVVDVGGGMGFATLGIVKHVDAKNVTILDMSPHLIAIAKEKEPLKECKIIEGDAEDLPFETDYVDRYVSARSIENWPDPQRGVKEAYRVLKKEEEDYLEWFEKAGFKDVQIKRIGPKWFHGVRRHGLIIGCSVTGFKPTSGGSPLQVTSTFININYDDNSMHAYK

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G567400
TK1151 IDTkA01G567400
OH-1004 IDLXL04_001003
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)68.500
Protein coverage (%)TK1151 92.593 / OH-1004 83.389
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G567400
LocationChr01:142850428-142851300 (-)
DescriptionSimilar to 2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g63410 Involved in a key methylation step in both tocopherols (vitamin E) and plastoquinone synthesis.
Highly divergent methyltransferases catalyze a conserved reaction in tocopherol and plastoquinone synthesis in cyanobacteria and photosynthetic eukaryotes.2003 · DOI: 10.1105/tpc.013656

Rice

Reference gene IDPossible functionPapers / DOI
Os12g0615400 Involved in a key methylation step in both tocopherols (vitamin E) and plastoquinone synthesis. No verified direct reference in this release
Os07g0179300 Involved in a key methylation step in both tocopherols (vitamin E) and plastoquinone synthesis. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_001003 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009060 aerobic respiration Biological Process
GO:0009234 menaquinone biosynthetic process Biological Process
GO:0010189 vitamin E biosynthetic process Biological Process
GO:0010236 plastoquinone biosynthetic process Biological Process
GO:0032259 methylation Biological Process
GO:0005829 cytosol Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0009536 plastid Cellular Component
GO:0009706 chloroplast inner membrane Cellular Component
GO:0009941 chloroplast envelope Cellular Component
GO:0008425 2-methoxy-6-polyprenyl-1,4-benzoquinol methyltransferase activity Molecular Function
GO:0008757 S-adenosylmethionine-dependent methyltransferase activity Molecular Function
KEGG gene cross-reference
ath:AT3G63410
dosa:Os12g0615400
rhi:NGR_c37130
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.223
Rank 1 · TkA01G567400 · TK1151
Endoplasmic reticulum0.203
Rank 2 · TkA01G567400 · TK1151
Plastid0.186
Rank 3 · TkA01G567400 · TK1151
Cytoplasm0.164
Rank 4 · TkA01G567400 · TK1151
Nucleus0.106
Rank 5 · TkA01G567400 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01135PCMT28-119 aa
PF08003Methyltransf_959-107 aa
PF00398RrnaAD66-142 aa
PF00891Methyltransf_267-140 aa
PF02527GidB67-141 aa
PF02475TRM5-TYW2_MTfase71-144 aa
PF01209Ubie_methyltran75-170 aa
PF05175MTS76-126 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G567400PF01135PCMT281190.2611.7
TkA01G567400PF08003Methyltransf_9591070.1311.9
TkA01G567400PF00398RrnaAD661420.0002820.8
TkA01G567400PF00891Methyltransf_2671400.0003220.8
TkA01G567400PF02527GidB671410.09112.8
TkA01G567400PF02475TRM5-TYW2_MTfase711440.003418.1
TkA01G567400PF01209Ubie_methyltran751703e-1247.1
TkA01G567400PF05175MTS761260.005317.1
TkA01G567400PF13847Methyltransf_31771718.6e-1039.3
TkA01G567400PF13649Methyltransf_25801703.1e-1557.3
TkA01G567400PF08241Methyltransf_11811702.8e-1763.8
TkA01G567400PF08242Methyltransf_12811706.9e-0730.6
TkA01G567400PF08003Methyltransf_91391610.1311.9
TkA01G567400PF01209Ubie_methyltran1731913e-1247.1
TkA01G567400PF08003Methyltransf_91771900.1311.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LY74Arabidopsis thalianasp|Q9LY74|BQMT_ARATH 2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic65.000%Swiss-ProtHigh
Q2QM69Oryza sativa subsp. japonicasp|Q2QM69|BQMT2_ORYSJ 2-methyl-6-phytyl-1,4-hydroquinone methyltransferase 2, chloroplastic60.400%Swiss-ProtHigh
Q6ZLD3Oryza sativa subsp. japonicasp|Q6ZLD3|BQMT1_ORYSJ 2-methyl-6-phytyl-1,4-hydroquinone methyltransferase 1, chloroplastic59.200%Swiss-ProtHigh

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