TkA01G542370 | RubberDandelionOmics

Gene overview

TkA01G542370

Reference: TK1151 Chr: Chr01 Coordinates: 136057389-136061755 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

939 bp · TkA01G542370|TK1151|cDNA

CCCAAGGTTTTCAGACACAAAACTCACGCCAACATATTGTTTCTCCCATACAAAATAAGAAATACGAAACGCCAGGAAAATAGGAAAGATCCGAACTTCGAACAGTTCTCTGATCTCAACTCCAGAAACGAGATTCAGCGATTCAGAGACTGTGTGAAGATGACGAAGAAAGCAAGGGTGTTGTTTCAGGTGATATTGTTAATGTTAATCGTGGTGCACCATGGCGAGTGCATATGGTTGAATTTACCCAAATCGGGAAG...

CDS

Download CDS FASTA

795 bp · TkA01G542370|TK1151|CDS

CCCAAGGTTTTCAGACACAAAACTCACGCCAACATATTGTTTCTCCCATACAAAATAAGAAATACGAAACGCCAGGAAAATAGGAAAGATCCGAACTTCGAACAGTTCTCTGATCTCAACTCCAGAAACGAGATTCAGCGATTCAGAGACTGTGTGAAGATGACGAAGAAAGCAAGGGTGTTGTTTCAGGTGATATTGTTAATGTTAATCGTGGTGCACCATGGCGAGTGCATATGGTTGAATTTACCCAAATCGGGAAG...

Protein

Download Protein FASTA

264 aa · TkA01G542370|TK1151|PROTEIN

PKVFRHKTHANILFLPYKIRNTKRQENRKDPNFEQFSDLNSRNEIQRFRDCVKMTKKARVLFQVILLMLIVVHHGECIWLNLPKSGRKCVTEEILNNVVVLADYVVISDVHIHPTPSITTKVTSPYGNILHFKENATHGQFAFTTSEAGQYLMCFWADDPNQGGALSVNIDWKTGIAAKDWDSVARREKIDGVELELRKLEGAVEAIHENLLYLKGREALMREVSETTNSRVALYSILSLGICIAASFAQLWYLTHFFQK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G542370`
TK1151 ID	TkA01G542370
OH-1004 ID	LXL04_031399
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	65.800
Protein coverage (%)	TK1151 71.591 / OH-1004 89.352 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G542370

Location Chr01:136057389-136061755 (-)

Description Similar to At1g09580: Transmembrane emp24 domain-containing protein p24delta3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g09580`	Involved in vesicular protein trafficking.	No verified direct reference in this release
`At1g57620`	Involved in vesicular protein trafficking.	No verified direct reference in this release
`At1g21900`	Involved in vesicular protein trafficking.	No verified direct reference in this release
`At3g10780`	Involved in vesicular protein trafficking.	No verified direct reference in this release
`At3g29070`	Involved in vesicular protein trafficking.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_031399 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006886 intracellular protein transport Biological Process

GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport Biological Process

GO:0007030 Golgi organization Biological Process

GO:0000139 Golgi membrane Cellular Component

GO:0005576 extracellular region Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0005793 endoplasmic reticulum-Golgi intermediate compartment Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005801 cis-Golgi network Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0030134 COPII-coated ER to Golgi transport vesicle Cellular Component

KEGG gene cross-reference

ath:AT1G09580

ath:AT1G21900

ath:AT1G26690

ath:AT1G57620

ath:AT3G10780

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.537

Rank 1 · TkA01G542370 · TK1151

Golgi apparatus0.498

Rank 2 · TkA01G542370 · TK1151

Cytoplasm0.099

Rank 3 · TkA01G542370 · TK1151

Cell membrane0.056

Rank 4 · TkA01G542370 · TK1151

Nucleus0.055

Rank 5 · TkA01G542370 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01105EMP24_GP25L45-72 aa

PF01105EMP24_GP25L78-259 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G542370	`PF01105`	EMP24_GP25L	45	72	8.4e-44	150.5
TkA01G542370	`PF01105`	EMP24_GP25L	78	259	8.4e-44	150.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q6IDL4`	Arabidopsis thaliana	sp\|Q6IDL4\|P24D3_ARATH Transmembrane emp24 domain-containing protein p24delta3	61.900%	Swiss-Prot	High
`Q9FVU0`	Arabidopsis thaliana	sp\|Q9FVU0\|P24D4_ARATH Transmembrane emp24 domain-containing protein p24delta4	66.500%	Swiss-Prot	High
`Q8RWM6`	Arabidopsis thaliana	sp\|Q8RWM6\|P24D5_ARATH Transmembrane emp24 domain-containing protein p24delta5	59.200%	Swiss-Prot	High
`F4J4Y0`	Arabidopsis thaliana	sp\|F4J4Y0\|P24D6_ARATH Transmembrane emp24 domain-containing protein p24delta6	49.700%	Swiss-Prot	Medium
`Q9LJV9`	Arabidopsis thaliana	sp\|Q9LJV9\|P24DB_ARATH Transmembrane emp24 domain-containing protein p24delta11	32.900%	Swiss-Prot	Medium

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