Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1679 bp · TkA01G541420|TK1151|cDNA
CAATGGTGGTCGGCGCTCATGACTAGACATGCTGCCCTGACCTGACCTGGAAAACCAGAAACTCTATCATGGTCGGTCCGTTAACAACAAAATCGGCAAAAAGAAAGTGCCAATAACCGTTTCCAACATTGCACATTGTTTCAAAATTCAAAGTATTCTGCGTTCTGTGCGAAAACCTCGTCAGATTCCTTCATATTTAACTTCAGGTTATAAAATATGGCCGATACCGAGGAAATTCAACCCCTCGTTTGCGACAATGG...
747 bp · TkA01G541420|TK1151|CDS
ATGGCCGATACCGAGGAAATTCAACCCCTCGTTTGCGACAATGGAACCGGAATGGTCAAGGCTGGATTTGCGGGAGACGATGCACCAAGAGCCGTGTTCCCGAGCATAGTCGGACGTCCACGTCACACAGGCGTAATGGTCGGAATGGGTCAAAAAGACGCTTACGTTGGTGACGAAGCACAATCAAAACGAGGCATCCTCACATTAAAATACCCAATCGAACACGGAATAGTCAGCAATTGGGATGACATGGAAAAAAT...
Protein
Download Protein FASTA248 aa · TkA01G541420|TK1151|PROTEIN
MADTEEIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDSLMKILTERGTRLRRPRNGKLCVILRRNWRMLRLIMIRNWKPRRVVLRLRKAMSCQMDR
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA01G541420 |
|---|---|
| TK1151 ID | TkA01G541420 |
| OH-1004 ID | LXL04_001386 |
| Relationship / confidence | Non Reciprocal Best Hit / Complex relationship |
| Protein identity (%) | 100.000 |
| Protein coverage (%) | TK1151 80.242 / OH-1004 52.785Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA01G541420 | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr01:135805964-135808994 (+) | |||||||||||||||
| Description | Similar to Actin | |||||||||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
Rice
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| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||||||||
| GO annotations (OH1004 source) | GO:0006893 Golgi to plasma membrane transport Biological Process GO:0008104 intracellular protein localization Biological Process GO:0009416 response to light stimulus Biological Process GO:0009611 response to wounding Biological Process GO:0009733 response to auxin Biological Process GO:0009845 seed germination Biological Process GO:0010053 root epidermal cell differentiation Biological Process GO:0015031 protein transport Biological Process GO:0048364 root development Biological Process GO:0048767 root hair elongation Biological Process GO:0051301 cell division Biological Process GO:0005730 nucleolus Cellular Component | |||||||||||||||
| KEGG gene cross-reference | ath:AT5G09810 dosa:Os03g0718100 ghi:107932458 ghi:107953109 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00022Actin5-200 aaPF17898GerD113-143 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA01G541420 | PF00022 | Actin | 5 | 200 | 6.2e-76 | 256.3 |
| TkA01G541420 | PF17898 | GerD | 113 | 143 | 0.24 | 12.1 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.