TkA01G533040 | RubberDandelionOmics

Gene overview

TkA01G533040

Reference: TK1151 Chr: Chr01 Coordinates: 133794761-133797323 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1442 bp · TkA01G533040|TK1151|cDNA

CAAATCAATTTCTAAAATGAGTTTAGGGCTTCTACAAAACACCCTTCTTCCTCACTTCACTGCTACTCCACTTTCCATCTCCCAATCCCACAATCTCCTGTTCACATTTCCCCACAACACGAATCCCACTTTCACAGGTCTCTATCTCTCTTTCCCTCTCCCTCTCTGAAGATTCCATCTTTAAAGATTTCACACTTTCTGTCTTCGATCGCAAGAACAAAGTCTTTTTAGGACGAGGGAATTTAGTATTTAAAGCTCGG...

CDS

Download CDS FASTA

357 bp · TkA01G533040|TK1151|CDS

ATGATGACTGCTCATTTGCTGCCAAATGAAGAGACTATTAAGAGAGGGGACAATGATGCTTTCTCTCTAGCTTTTGCAAGGATTGAGAACCATTACTTTTCAAATAAAGGATTCTTTTCAACAGATTCATATCTCTTGGATAATATCGACAAGATCAAGCATATCAATGCTGTAATTGTACAGGGAAGATATGATTGTTGCTGCCCCATGATGTCGGCATGGGATCTGCATAAAGCATGGCCAGAAGCCGAATTTAAGGT...

Protein

Download Protein FASTA

118 aa · TkA01G533040|TK1151|PROTEIN

MMTAHLLPNEETIKRGDNDAFSLAFARIENHYFSNKGFFSTDSYLLDNIDKIKHINAVIVQGRYDCCCPMMSAWDLHKAWPEAEFKVVPDAGHSANEPGVAAQLVAANEKLKNIIKSK

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G533040`
TK1151 ID	TkA01G533040
OH-1004 ID	LXL04_001470
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 29.949 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G533040

Location Chr01:133794761-133797323 (+)

Description Similar to PIP: Proline iminopeptidase

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g14260`	Specifically catalyzes the removal of N-terminal proline residues from peptides.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_001470 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006508 proteolysis Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0010038 response to metal ion Biological Process

GO:1902074 response to salt Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0099503 secretory vesicle Cellular Component

GO:0004177 aminopeptidase activity Molecular Function

KEGG gene cross-reference

ath:AT2G14260

xfa:XF_1510

xft:PD_0727

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.585

Rank 1 · TkA01G533040 · TK1151

Nucleus0.213

Rank 2 · TkA01G533040 · TK1151

Peroxisome0.110

Rank 3 · TkA01G533040 · TK1151

Mitochondrion0.093

Rank 4 · TkA01G533040 · TK1151

Extracellular0.078

Rank 5 · TkA01G533040 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00561Abhydrolase_144-97 aa

PF08386Abhydrolase_453-96 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G533040	`PF00561`	Abhydrolase_1	44	97	0.00024	21.6
TkA01G533040	`PF08386`	Abhydrolase_4	53	96	0.025	15.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`P93732`	Arabidopsis thaliana	sp\|P93732\|PIP_ARATH Proline iminopeptidase	72.200%	Swiss-Prot	High

JBrowse

View in Genome Browser

Gene Card