LXL04_001470 | RubberDandelionOmics

Gene overview

LXL04_001470

Reference: OH-1004 Chr: Chr01 Coordinates: 27346526-27349001 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1185 bp · LXL04_001470|LXL04_001470|OH1004|cDNA

ATGAGTTTAGGGCTTCTACAAAACACCCTTCTTCCTCACTTCACTGCTACTCCACTTTCCATCTCCCAATCCCACAATCTCCTGTTCACATTTCCCCACAACACGAATCCCACTTTCACAGGACGAGGGAATTTAGTATTTAAAGCTCGGATTTCTTGCAATAAGAGCGAATTAATACCGGTAATCACAGAATCAATGGATTCAAAGAAAGAGGTTCAAGAATTAAACAAGAATCTTTACGAACATATAGAGCCATATGC...

CDS

Download CDS FASTA

1185 bp · LXL04_001470|LXL04_001470|OH1004|CDS

ATGAGTTTAGGGCTTCTACAAAACACCCTTCTTCCTCACTTCACTGCTACTCCACTTTCCATCTCCCAATCCCACAATCTCCTGTTCACATTTCCCCACAACACGAATCCCACTTTCACAGGACGAGGGAATTTAGTATTTAAAGCTCGGATTTCTTGCAATAAGAGCGAATTAATACCGGTAATCACAGAATCAATGGATTCAAAGAAAGAGGTTCAAGAATTAAACAAGAATCTTTACGAACATATAGAGCCATATGC...

Protein

Download Protein FASTA

394 aa · LXL04_001470|LXL04_001470|OH1004|PROTEIN

MSLGLLQNTLLPHFTATPLSISQSHNLLFTFPHNTNPTFTGRGNLVFKARISCNKSELIPVITESMDSKKEVQELNKNLYEHIEPYATGFLKVSDLHSIYWEQSGNPSGHPVVFLHGGPGGGTSPSNRRFFDPEFYRIILFDQRGAGKSTPHACLEENTTWDLINDIEKLREHFEIPEWQVFGGSWGSTLALAYSQSHPDKVTGIVLRGIFLLRKKEIDWFYEGGAAAIYPDAWEPFRDLIPENERDCFVKAYHKRLNSD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_001470`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_001470

Location Chr01:27346526-27349001 (-)

Description Similar to PIP: Proline iminopeptidase

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g14260`	Specifically catalyzes the removal of N-terminal proline residues from peptides.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_001470 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006508 proteolysis Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0010038 response to metal ion Biological Process

GO:1902074 response to salt Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0099503 secretory vesicle Cellular Component

GO:0004177 aminopeptidase activity Molecular Function

KEGG gene cross-reference

ath:AT2G14260

xfa:XF_1510

xft:PD_0727

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.924

Rank 1 · LXL04_001470 · OH-1004

Mitochondrion0.086

Rank 2 · LXL04_001470 · OH-1004

Cytoplasm0.086

Rank 3 · LXL04_001470 · OH-1004

Peroxisome0.063

Rank 4 · LXL04_001470 · OH-1004

Nucleus0.028

Rank 5 · LXL04_001470 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00561.27Abhydrolase_1111-373 aa

PF12697.14Abhydrolase_6112-373 aa

PF12146.16Hydrolase_4136-222 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_001470	`PF00561.27`	Abhydrolase_1	111	373	6.7e-31	108.5
LXL04_001470	`PF12697.14`	Abhydrolase_6	112	373	5.8e-09	37.6
LXL04_001470	`PF12146.16`	Hydrolase_4	136	222	1e-08	35.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`P93732`	Arabidopsis thaliana	Proline iminopeptidase	74.185%	Swiss-Prot	strong database homology

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