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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G532730
Reference: TK1151 Chr: Chr01 Coordinates: 133730182-133732640 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2159 bp · TkA01G532730|TK1151|cDNA

GGGATAGAAGGCGTGTGGGGGCGGAACGACCAGCGTGCCTTTTCCCTTTACATTACTGCAAACCTCTTGAAACTCATGTTTTTTATTCGAAATTCGATCTTCAATTTGGTCAAATTTGACGCATCACCAAGTTAGTTTCATCGATTTTACCCTAAACTGACCATTTCGGTTCAGCGATTCCTCAATTTGGTGAACTACCTGCTCTGACTTTTAGGGTGTTTGGAGCTCCTTCGATTTTGTTCAATGGTGGTGGTTTCGAG...

CDS

Download CDS FASTA

1680 bp · TkA01G532730|TK1151|CDS

ATGGTGGTGGTTTCGAGTGGATTCGCTAGCTCTGTTGTTCTTACTGAATCCGATTTCAGAAACATGATGATCAGTCGTTCTTCTTCTTCATCTCGTTCGTTCGTTCATTTTAATCCACCGTCTTCGTCTTTAGCTTATGTTCCATCTCAGCTTCGTATAGACTCTAAGCCGGTTGGTGTTAGGAGATCGATATCCGATAGGGGATCAGCTCGTGTAAACCCTAGATGCGAGGATATGTCGGAGGGAACCACCGGTGATGG...

Protein

Download Protein FASTA

559 aa · TkA01G532730|TK1151|PROTEIN

MVVVSSGFASSVVLTESDFRNMMISRSSSSSRSFVHFNPPSSSLAYVPSQLRIDSKPVGVRRSISDRGSARVNPRCEDMSEGTTGDGSPASAKSSSLSALEALKTSAGDRYTKERSSVMVIGLNFHTSPVDIREKLSIPEAQLPQAISELCSLHHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSKVSGVSVSEISRHQFLLYNKDATTHLFEVSSGLDSLVLGEGQILSQVKHVVKVSQGVPGFDRKISGLFKHA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G532730
TK1151 IDTkA01G532730
OH-1004 IDLXL04_001472
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)100.000
Protein coverage (%)TK1151 99.821 / OH-1004 62.486
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G532730
LocationChr01:133730182-133732640 (-)
DescriptionSimilar to HEMA1: Glutamyl-tRNA reductase 1, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g58290 Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).
Divergent regulation of the HEMA gene family encoding glutamyl-tRNA reductase in Arabidopsis thaliana: expression of HEMA2 is regulated by sugars, but is independent of light and plastid signalling.2002 · DOI: 10.1023/a:1016081114758
Light regulation of chlorophyll biosynthesis at the level of 5-aminolevulinate formation in Arabidopsis.1994 · DOI: 10.1105/tpc.6.2.265
At1g09940 Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).
Divergent regulation of the HEMA gene family encoding glutamyl-tRNA reductase in Arabidopsis thaliana: expression of HEMA2 is regulated by sugars, but is independent of light and plastid signalling.2002 · DOI: 10.1023/a:1016081114758
Induction of isoforms of tetrapyrrole biosynthetic enzymes, AtHEMA2 and AtFC1, under stress conditions and their physiological functions in Arabidopsis.2007 · DOI: 10.1104/pp.107.100065
A second and differentially expressed glutamyl-tRNA reductase gene from Arabidopsis thaliana.1996 · DOI: 10.1007/bf00049321

Rice

Reference gene IDPossible functionPapers / DOI
UniProt: A2Z928 Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_001472 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006779 porphyrin-containing compound biosynthetic process Biological Process
GO:0006782 protoporphyrinogen IX biosynthetic process Biological Process
GO:0006783 heme biosynthetic process Biological Process
GO:0006979 response to oxidative stress Biological Process
GO:0009416 response to light stimulus Biological Process
GO:0015995 chlorophyll biosynthetic process Biological Process
GO:0033014 tetrapyrrole biosynthetic process Biological Process
GO:0009507 chloroplast Cellular Component
GO:0009536 plastid Cellular Component
GO:0031969 chloroplast membrane Cellular Component
GO:0032991 protein-containing complex Cellular Component
GO:0008883 glutamyl-tRNA reductase activity Molecular Function
KEGG gene cross-reference
ag:CAA63140
ath:AT1G09940
ath:AT1G58290
csv:101208135
csv:101220615
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.910
Rank 1 · TkA01G532730 · TK1151
Mitochondrion0.127
Rank 2 · TkA01G532730 · TK1151
Cytoplasm0.037
Rank 3 · TkA01G532730 · TK1151
Nucleus0.028
Rank 4 · TkA01G532730 · TK1151
Peroxisome0.015
Rank 5 · TkA01G532730 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01488Shikimate_DH2-30 aa
PF02254TrkA_N12-27 aa
PF05201GlutR_N121-271 aa
PF16574CEP209_CC5170-223 aa
PF16912Glu_dehyd_C278-417 aa
PF01488Shikimate_DH286-422 aa
PF23247LRR_RPS2289-309 aa
PF028262-Hacid_dh_C291-370 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G532730PF01488Shikimate_DH2305e-42144.0
TkA01G532730PF02254TrkA_N12270.0003321.7
TkA01G532730PF05201GlutR_N1212713.2e-49167.3
TkA01G532730PF16574CEP209_CC51702230.06914.0
TkA01G532730PF16912Glu_dehyd_C2784172.7e-0524.4
TkA01G532730PF01488Shikimate_DH2864225e-42144.0
TkA01G532730PF23247LRR_RPS22893090.2312.1
TkA01G532730PF028262-Hacid_dh_C2913700.001618.6
TkA01G532730PF00899ThiF2973290.001318.6
TkA01G532730PF13241NAD_binding_72993720.000421.6
TkA01G532730PF01113DapB_N3003700.001819.1
TkA01G532730PF02423OCD_Mu_crystall3003840.02314.4
TkA01G532730PF00044Gp_dh_N3003590.02415.6
TkA01G532730PF01408GFO_IDH_MocA3003730.1113.9
TkA01G532730PF03807F420_oxidored3013711.6e-0629.3
TkA01G532730PF21799MurD-like_N3013370.1812.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
P42804Arabidopsis thalianasp|P42804|HEM11_ARATH Glutamyl-tRNA reductase 1, chloroplastic68.000%Swiss-ProtHigh
P49294Arabidopsis thalianasp|P49294|HEM12_ARATH Glutamyl-tRNA reductase 2, chloroplastic66.500%Swiss-ProtHigh
A2Z928Oryza sativa subsp. indicasp|A2Z928|HEM1_ORYSI Glutamyl-tRNA reductase, chloroplastic60.300%Swiss-ProtHigh

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