TkA01G518440 | RubberDandelionOmics

Gene overview

TkA01G518440

Reference: TK1151 Chr: Chr01 Coordinates: 129959847-129964420 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2075 bp · TkA01G518440|TK1151|cDNA

AACAAACAGGCCCTAACCCTTTTCACTTTCCTCGTATATGAATTGTTAGGTTAAAAAAGTGGGTTACGAGACGAACAACGTCATCGGCTTTCAATTTCCCTCCCCCCGTTACAAAAAACCATGGTAGGCGATTCGGCGAACTCCCTCAGGCTTCCGGCGTTCCTCCTCCTACTCATGTTTTTGAACTCTGCCTGTCTCGTTCTTTCAGGAGAGCTGCCTTCTATAACGATTTCAAAAAAGCTTGCTTTATTGAGGATATC...

CDS

Download CDS FASTA

1266 bp · TkA01G518440|TK1151|CDS

ATGGTAGGCGATTCGGCGAACTCCCTCAGGCTTCCGGCGTTCCTCCTCCTACTCATGTTTTTGAACTCTGCCTGTCTCGTTCTTTCAGGAGAGCTGCCTTCTATAACGATTTCAAAAAAGCTTGCTTTATTGAGGATATCCCCAAAGTTGGTAGTAGACAAGTCTCCAGGTACTGAACCTGGATCTCGAGTGGTGTGTGAAAGAGTTCAAATTAATGGGCTCTCAAGGTTCAAAAACCTCAACAATTTCTTCTCTTCGGG...

Protein

Download Protein FASTA

421 aa · TkA01G518440|TK1151|PROTEIN

MVGDSANSLRLPAFLLLLMFLNSACLVLSGELPSITISKKLALLRISPKLVVDKSPGTEPGSRVVCERVQINGLSRFKNLNNFFSSGRVRVFNKNANVHSPNISICFHRNASLAVCMCSEGQWSLMESFWARSLSPFSHKLFLDIRLVGPHPSPRSLDVKVHNEFFLSRLLYLVSGILLMSFATPLSKSYIVYYGVGMTMGYILVALAIFCEAMRILTYGNKIFACALYAFIIAIGSFSFGYIPTIFYLLLAKVGISEDV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G518440`
TK1151 ID	TkA01G518440
OH-1004 ID	LXL04_001693
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	100.000
Protein coverage (%)	TK1151 99.762 / OH-1004 74.600 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA01G518440`
Location	Chr01:129959847-129964420 (-)
Description	Similar to bVPE: Vacuolar-processing enzyme beta-isozyme
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_001693` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006624 vacuolar protein processing Biological Process GO:0051603 proteolysis involved in protein catabolic process Biological Process GO:0000326 protein storage vacuole Cellular Component GO:0005773 vacuole Cellular Component GO:0004197 cysteine-type endopeptidase activity Molecular Function
KEGG gene cross-reference	ath:AT1G62710 gmx:547964 rcu:8272115 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.423

Rank 1 · TkA01G518440 · TK1151

Golgi apparatus0.194

Rank 2 · TkA01G518440 · TK1151

Cell membrane0.167

Rank 3 · TkA01G518440 · TK1151

Nucleus0.154

Rank 4 · TkA01G518440 · TK1151

Lysosome / Vacuole0.146

Rank 5 · TkA01G518440 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF20237DUF6594115-229 aa

PF10225NEMP159-350 aa

PF20237DUF6594302-334 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G518440	`PF20237`	DUF6594	115	229	9.2	6.8
TkA01G518440	`PF10225`	NEMP	159	350	4.7e-17	63.2
TkA01G518440	`PF20237`	DUF6594	302	334	9.2	6.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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