TkA01G511760 | RubberDandelionOmics

Gene overview

TkA01G511760

Reference: TK1151 Chr: Chr01 Coordinates: 128239148-128241059 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1557 bp · TkA01G511760|TK1151|cDNA

CGGAAAGACAATGAGACAATCAAATGAAAAGTAAGCCACCCGCTTTCGTCTTTACCTTTAAACCCTTCTTCCCCAAATCTACAACCACCATTTTCATGTAAGACAACCATGGATTCCTCTTCTTTTACACCTGCTAGACCACCCTTTTCCCTCCTCTTTTCTCTCATGGCGAACTACCTACCTTCCTCTCTATAAATACCTTCATCTCCCACTCACTCACTCACTCACTCTCTCGTTCCTCCTTTCACCTTTCTGCAAAT...

CDS

Download CDS FASTA

1020 bp · TkA01G511760|TK1151|CDS

ATGGCTACTAATTCAGTTGAGATCGAGAACTCAGAAGAATCGAAAGTTCATGTTTTCTCATCATCAACAGAGTTACTCGAGAAGTTGCATCAGAAATGGAATTCAGTCGAGAAGCCTCCATATCCAGCCATGTATTCAAGTGTTTACGGCGGAATTATTCTCGATCCAGCGATGATGGTCATCCCGATCGACGATCATATGGTACATCGAGGTCACGGCGTATTCGACACCGCCATAATTCTCGACGGATACCTCTACGA...

Protein

Download Protein FASTA

339 aa · TkA01G511760|TK1151|PROTEIN

MATNSVEIENSEESKVHVFSSSTELLEKLHQKWNSVEKPPYPAMYSSVYGGIILDPAMMVIPIDDHMVHRGHGVFDTAIILDGYLYELDAHLDRILISASKAKISSPFPKSTLRTILIQLTAASNIKKGTLRYWLTSGPGDFLLTPSNSPTPAFYAVVIDEQFSQCKHGVKVITSTIPMKVPLFATSKNVNYLPNVLSKLEAEEQGAFASIWVDDEGYVAEGPNVNVAFVTRGNELILPYFEKILSGCTAKRLLELAPKL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G511760`
TK1151 ID	TkA01G511760
OH-1004 ID	LXL04_039552
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	99.400
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G511760

Location Chr01:128239148-128241059 (+)

Description Similar to DAAT: D-amino-acid transaminase, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g57850`	Amino acid aminotransferase showing activity for D-Asp and D-Ala as amino donors with 2-oxoglutarate as an amino acceptor.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_039552 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0008153 4-aminobenzoate biosynthetic process Biological Process

GO:0009097 isoleucine biosynthetic process Biological Process

GO:0009098 L-leucine biosynthetic process Biological Process

GO:0009099 L-valine biosynthetic process Biological Process

GO:0019478 D-amino acid catabolic process Biological Process

GO:0019752 carboxylic acid metabolic process Biological Process

GO:0046437 D-amino acid biosynthetic process Biological Process

GO:0046654 tetrahydrofolate biosynthetic process Biological Process

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009570 chloroplast stroma Cellular Component

GO:0008696 4-amino-4-deoxychorismate lyase activity Molecular Function

KEGG gene cross-reference

afu:AF_0933

ath:AT5G57850

lin:daaA

mja:MJ_1008

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.766

Rank 1 · TkA01G511760 · TK1151

Nucleus0.248

Rank 2 · TkA01G511760 · TK1151

Peroxisome0.100

Rank 3 · TkA01G511760 · TK1151

Mitochondrion0.074

Rank 4 · TkA01G511760 · TK1151

Cell membrane0.041

Rank 5 · TkA01G511760 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01063Aminotran_473-300 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G511760	`PF01063`	Aminotran_4	73	300	1.3e-40	140.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8L493`	Arabidopsis thaliana	sp\|Q8L493\|DAAA_ARATH D-amino-acid transaminase, chloroplastic	59.900%	Swiss-Prot	High

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