TkA01G488290 | RubberDandelionOmics

Gene overview

TkA01G488290

Reference: TK1151 Chr: Chr01 Coordinates: 122132995-122135342 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1005 bp · TkA01G488290|TK1151|cDNA

ATGTACAAGAATCCGTTTGCCTTTCTTCAGAGTCATACTGAAATGATGAAGACATTCAAGATATGGACTTATAAGGAAGGAGATATTCCCTTGATGCATAATGGTCCGATGAAAAGTATATACAGTGCCGAGGGTCAATTCATCCATGAGATGGAGAGAAAGGGAAATCCTCTTGCTGCTAAGCACCCCGATGAAGCCCATGCCTTTTTTATCCCGATAAGTGTAGCCAAGATTGTTCACTACCTCTACACACCGGAAGA...

CDS

Download CDS FASTA

1005 bp · TkA01G488290|TK1151|CDS

ATGTACAAGAATCCGTTTGCCTTTCTTCAGAGTCATACTGAAATGATGAAGACATTCAAGATATGGACTTATAAGGAAGGAGATATTCCCTTGATGCATAATGGTCCGATGAAAAGTATATACAGTGCCGAGGGTCAATTCATCCATGAGATGGAGAGAAAGGGAAATCCTCTTGCTGCTAAGCACCCCGATGAAGCCCATGCCTTTTTTATCCCGATAAGTGTAGCCAAGATTGTTCACTACCTCTACACACCGGAAGA...

Protein

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334 aa · TkA01G488290|TK1151|PROTEIN

MYKNPFAFLQSHTEMMKTFKIWTYKEGDIPLMHNGPMKSIYSAEGQFIHEMERKGNPLAAKHPDEAHAFFIPISVAKIVHYLYTPEEAFGFLERIELIFQDYIYIISQRYPYWNRSNGADHFFVSCHDWGPFVSQRNNPKLFQNVIRVLCNANTSEGFIPRRDVSMTEINGPYNNIPNVSGGQSPHNRSILAFFAGGNHGVVRNKLFQYWGNKEDNDIQVYTLLQENQNYTEFLSRSKYCLCPSGYEVASARLTEAIYVG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G488290`
TK1151 ID	TkA01G488290
OH-1004 ID	LXL04_005324
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	52.400
Protein coverage (%)	TK1151 99.102 / OH-1004 76.856 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G488290

Location Chr01:122132995-122135342 (+)

Description Similar to At5g11130/At5g11120: Probable glycosyltransferase At5g11130

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g20260`	May be involved in cell wall biosynthesis.	No verified direct reference in this release
`UniProt: Q9LFP3`	May be involved in cell wall biosynthesis.	No verified direct reference in this release
`At3g42180`	May be involved in cell wall biosynthesis.	No verified direct reference in this release
`At5g33290`	Involved in pectin biosynthesis.	Identification of a xylogalacturonan xylosyltransferase involved in pectin biosynthesis in Arabidopsis.2008 · DOI: 10.1105/tpc.107.050906
`At5g03795`	May be involved in cell wall biosynthesis.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_005324 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009101 glycoprotein biosynthetic process Biological Process

GO:0010398 xylogalacturonan metabolic process Biological Process

GO:0045489 pectin biosynthetic process Biological Process

GO:0071555 cell wall organization Biological Process

GO:0000139 Golgi membrane Cellular Component

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005768 endosome Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005802 trans-Golgi network Cellular Component

GO:0009507 chloroplast Cellular Component

KEGG gene cross-reference

ath:AT3G42180

ath:AT5G03795

ath:AT5G11130

ath:AT5G20260

ath:AT5G33290

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.458

Rank 1 · TkA01G488290 · TK1151

Endoplasmic reticulum0.356

Rank 2 · TkA01G488290 · TK1151

Cytoplasm0.060

Rank 3 · TkA01G488290 · TK1151

Nucleus0.059

Rank 4 · TkA01G488290 · TK1151

Cell membrane0.041

Rank 5 · TkA01G488290 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF24785RXYLT1_C3-18 aa

PF03016Exostosin_GT4716-296 aa

PF00534Glycos_transf_1129-158 aa

PF00534Glycos_transf_1207-268 aa

PF24785RXYLT1_C226-266 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G488290	`PF24785`	RXYLT1_C	3	18	0.00015	21.9
TkA01G488290	`PF03016`	Exostosin_GT47	16	296	9.9e-55	186.7
TkA01G488290	`PF00534`	Glycos_transf_1	129	158	0.0059	16.9
TkA01G488290	`PF00534`	Glycos_transf_1	207	268	0.0059	16.9
TkA01G488290	`PF24785`	RXYLT1_C	226	266	0.00015	21.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q3E9A4`	Arabidopsis thaliana	sp\|Q3E9A4\|GLYT5_ARATH Probable glycosyltransferase At5g20260	52.700%	Swiss-Prot	High
`Q9LFP3`	Arabidopsis thaliana	sp\|Q9LFP3\|GLYT4_ARATH Probable glycosyltransferase At5g11130	51.300%	Swiss-Prot	High
`Q3EAR7`	Arabidopsis thaliana	sp\|Q3EAR7\|GLYT2_ARATH Probable glycosyltransferase At3g42180	54.600%	Swiss-Prot	High
`Q94AA9`	Arabidopsis thaliana	sp\|Q94AA9\|XGD1_ARATH Xylogalacturonan beta-1,3-xylosyltransferase	51.800%	Swiss-Prot	High
`Q9FFN2`	Arabidopsis thaliana	sp\|Q9FFN2\|GLYT3_ARATH Probable glycosyltransferase At5g03795	51.300%	Swiss-Prot	High

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