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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G474350
Reference: TK1151 Chr: Chr01 Coordinates: 118720850-118724801 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1832 bp · TkA01G474350|TK1151|cDNA

AAACACAAGGCTCACTTATATAAGTACAATAAATAAAAGAGTTGATTTAATGGAACATATTAAAGAAATGCAATCAGACTCGATTGTGTGTATAGTGCACCCGAAAAGTATCCAAAATGGCAACGATCATACGACGTTTATCCGTAAAAACACGTGCAACATATCGGCGACCGTGACAGATACCCACACTCTCGGTCCATCTTCATCTTTTTATTTCTTTCTCCTCTTTCGTTTTTGACCTGAACCTCACCCTTCCCACT...

CDS

Download CDS FASTA

1095 bp · TkA01G474350|TK1151|CDS

ATGGGTGAGGATCCAGTGAATCTGAATGAGTATCAAGAATTGGCAAGACAGGCTCTTCCAAAAATGTATTACGACTACTTTGCTGGGGGATCCGAGGATCAACACACACTAAGAGAGAACGTTGAAGCATTTAAACGAATCACTCTTCGACCAAGAATTCTTGTGGATGTGAGCAAAATAGATATGTCGACAACAATTTTGGGTTACAAAACTTCAGCACCCATTATGATCGCCCCAACCGCTTTGCATAAGTTAGCACA...

Protein

Download Protein FASTA

364 aa · TkA01G474350|TK1151|PROTEIN

MGEDPVNLNEYQELARQALPKMYYDYFAGGSEDQHTLRENVEAFKRITLRPRILVDVSKIDMSTTILGYKTSAPIMIAPTALHKLAHPEGEVLTARAAGSCDVIMGLSFMSTCTIEEVASSCNAVRFFQLYVYKKREISALMVKRAEANGFKAILLTVDTPKLGRREADIKNKMIAPQLKNFEGLVSTKVEDDEGSNVEAFVARSFDPSLSWKDIAWLKSITKLPILVKGILTREDAIKALEVGVEGIIVSNHGARQLDF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G474350
TK1151 IDTkA01G474350
OH-1004 IDLXL04_002213
Relationship / confidenceSequence Supported Annotation Or Model Conflict / Review
Protein identity (%)98.600
Protein coverage (%)TK1151 96.703 / OH-1004 33.911
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G474350
LocationChr01:118720850-118724801 (+)
DescriptionSimilar to GLO4: Peroxisomal (S)-2-hydroxy-acid oxidase GLO4
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g14130 Oxidase that catalyzes the oxidation of a broad range of 2-hydroxyacids to the corresponding 2-oxoacids, with a reduction of O2 to H2O2. No verified direct reference in this release
At3g14150 Oxidase that catalyzes the oxidation of a broad range of 2-hydroxyacids to the corresponding 2-oxoacids, with a reduction of O2 to H2O2. No verified direct reference in this release
At3g14420 Catalyzes the oxidation of glycolate to glyoxylate, with a reduction of O2 to H2O2. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os07g0616500 Oxidase that catalyzes the oxidation of a broad range of 2-hydroxyacids to the corresponding 2-oxoacids, with a reduction of O2 to H2O2. No verified direct reference in this release
UniProt: B8B8K5 Oxidase that catalyzes the oxidation of a broad range of 2-hydroxyacids to the corresponding 2-oxoacids, with a reduction of O2 to H2O2. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_002213 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006631 fatty acid metabolic process Biological Process
GO:0009853 photorespiration Biological Process
GO:0009854 oxidative photosynthetic carbon pathway Biological Process
GO:0010109 regulation of photosynthesis Biological Process
GO:0042742 defense response to bacterium Biological Process
GO:0046718 symbiont entry into host cell Biological Process
GO:0050665 hydrogen peroxide biosynthetic process Biological Process
GO:0005737 cytoplasm Cellular Component
GO:0005777 peroxisome Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003973 (S)-2-hydroxy-acid oxidase activity Molecular Function
GO:0010181 FMN binding Molecular Function
KEGG gene cross-reference
ath:AT3G14130
ath:AT3G14150
ath:AT4G18360
dosa:Os07g0616500
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Peroxisome0.549
Rank 1 · TkA01G474350 · TK1151
Cytoplasm0.316
Rank 2 · TkA01G474350 · TK1151
Mitochondrion0.125
Rank 3 · TkA01G474350 · TK1151
Nucleus0.087
Rank 4 · TkA01G474350 · TK1151
Plastid0.044
Rank 5 · TkA01G474350 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01070FMN_dh15-354 aa
PF00478IMPDH90-111 aa
PF01207Dus209-251 aa
PF04309G3P_antiterm210-253 aa
PF05690ThiG217-260 aa
PF00977His_biosynth224-269 aa
PF01180DHO_dh224-244 aa
PF04309G3P_antiterm253-307 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G474350PF01070FMN_dh153543.7e-136454.5
TkA01G474350PF00478IMPDH901114.6e-0833.2
TkA01G474350PF01207Dus2092510.0007419.4
TkA01G474350PF04309G3P_antiterm2102530.02115.0
TkA01G474350PF05690ThiG2172608.7e-0729.3
TkA01G474350PF00977His_biosynth2242699.3e-0522.7
TkA01G474350PF01180DHO_dh2242440.000420.4
TkA01G474350PF04309G3P_antiterm2533070.02115.0
TkA01G474350PF01207Dus2623080.0007419.4
TkA01G474350PF01180DHO_dh2633130.000420.4
TkA01G474350PF00478IMPDH2643094.6e-0833.2
TkA01G474350PF03060NMO2643432.6e-0627.8
TkA01G474350PF00977His_biosynth2643099.3e-0522.7
TkA01G474350PF05690ThiG2683098.7e-0729.3
TkA01G474350PF01645Glu_synthase2743101.7e-0524.9
TkA01G474350PF00478IMPDH3223514.6e-0833.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LJH5Arabidopsis thalianasp|Q9LJH5|HAOX1_ARATH Peroxisomal (S)-2-hydroxyacid oxidase GLO476.400%Swiss-ProtHigh
Q24JJ8Arabidopsis thalianasp|Q24JJ8|HAOX2_ARATH Peroxisomal (S)-2-hydroxyacid oxidase GLO373.700%Swiss-ProtHigh
Q9LRR9Arabidopsis thalianasp|Q9LRR9|GLO1_ARATH Glycolate oxidase 162.900%Swiss-ProtHigh
Q8H3I4Oryza sativa subsp. japonicasp|Q8H3I4|HAOX_ORYSJ Peroxisomal (S)-2-hydroxy-acid oxidase GLO468.500%Swiss-ProtHigh
B8B8K5Oryza sativa subsp. indicasp|B8B8K5|HAOX_ORYSI Peroxisomal (S)-2-hydroxy-acid oxidase GLO467.600%Swiss-ProtHigh

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