TkA01G474200 | RubberDandelionOmics

Gene overview

TkA01G474200

Reference: TK1151 Chr: Chr01 Coordinates: 118673979-118679521 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3393 bp · TkA01G474200|TK1151|cDNA

GGAACGACCATTGCACCGTTAGTCGTTCTAAAACCCTAAAATAAACCTCCAACACCACCGTTAATTCTTTCTGGCCGACACTTGAGCGACCTCTATCGAACCTTCGCCGCTTCCTCTGGTTCGTCCTTCGGCCATTACTTCCGGGCCTCTTCTCCTGTAATCCCCTGAAAAAAATGGCAATCACAAAGGAGAAGAAGAAATCTTCATCTTCATCAGCAACAATATCCAAAGACAATGACCCTGATCTCCTTCGATCAGAA...

CDS

Download CDS FASTA

1146 bp · TkA01G474200|TK1151|CDS

ATGGATTCAAGATTGTTATCAGCTCTTTTAACAGGAGTGAATAGGGCTTTTCCTTATGTTGCAAGCAATGAAGCAGATGACATTGTTGAATCTCAAACTCCAATGCTTTTTCAACTTGTTCACTCAAAGAACTTCAATGTCGGAGTTCAAGCATTGATGCTTCTTGACAAAATTTCATCAAAAAATCAAGTTGTCAGTGACCGGTTTTATCGTGCCTTGTACTCCAAGCTACTACTTCCTTCTGCCATGAACACTTCCAA...

Protein

Download Protein FASTA

381 aa · TkA01G474200|TK1151|PROTEIN

MDSRLLSALLTGVNRAFPYVASNEADDIVESQTPMLFQLVHSKNFNVGVQALMLLDKISSKNQVVSDRFYRALYSKLLLPSAMNTSKEEMFIGLLLRAMKNDLNLKRVAAFAKRLLQVSLQQPPQYACACIFLLSEVLKSKPPLWNMVLQNESADEELEHFKDIVEDQDKPTPAVHDNDDDMADDDDDMPDDVAKSDDEMSDEKDDDDDDILGFSTLTESQTKSTVKTAKAALPGGYDPRHREPTYANADCVGWWELMVL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G474200`
TK1151 ID	TkA01G474200
OH-1004 ID	LXL04_002218
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 94.751 / OH-1004 35.637 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G474200

Location Chr01:118673979-118679521 (+)

Description Similar to CEBPZ: CCAAT/enhancer-binding protein zeta

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g72440`	Together with NOC2, probably involved in pre-ribosome export from the nucleus to the cytoplasm.	SLOW WALKER2, a NOC1/MAK21 homologue, is essential for coordinated cell cycle progression during female gametophyte development in Arabidopsis.2009 · DOI: 10.1104/pp.109.142414

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_002218 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0009553 embryo sac development Biological Process

GO:0009555 pollen development Biological Process

GO:0010197 polar nucleus fusion Biological Process

GO:0042254 ribosome biogenesis Biological Process

GO:0045944 positive regulation of transcription by RNA polymerase II Biological Process

GO:0051302 regulation of cell division Biological Process

GO:0005634 nucleus Cellular Component

GO:0005654 nucleoplasm Cellular Component

GO:0005730 nucleolus Cellular Component

GO:0016602 CCAAT-binding factor complex Cellular Component

GO:0030690 Noc1p-Noc2p complex Cellular Component

KEGG gene cross-reference

ath:AT1G72440

cthr:CTHT_0059330

hsa:10153

mmu:12607

spo:2543648

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.939

Rank 1 · TkA01G474200 · TK1151

Cytoplasm0.135

Rank 2 · TkA01G474200 · TK1151

Cell membrane0.020

Rank 3 · TkA01G474200 · TK1151

Mitochondrion0.015

Rank 4 · TkA01G474200 · TK1151

Endoplasmic reticulum0.011

Rank 5 · TkA01G474200 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03914CBF49-272 aa

PF12226Astro_capsid_p152-210 aa

PF04147Nop14153-225 aa

PF04147Nop14341-361 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G474200	`PF03914`	CBF	49	272	7.8e-46	156.8
TkA01G474200	`PF12226`	Astro_capsid_p	152	210	2.0	8.2
TkA01G474200	`PF04147`	Nop14	153	225	6.2	5.6
TkA01G474200	`PF04147`	Nop14	341	361	6.2	5.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`F4IDC2`	Arabidopsis thaliana	sp\|F4IDC2\|SWA2_ARATH Protein SLOW WALKER 2	61.000%	Swiss-Prot	High

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