TkA01G466360 | RubberDandelionOmics

Gene overview

TkA01G466360

Reference: TK1151 Chr: Chr01 Coordinates: 116847830-116849628 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

929 bp · TkA01G466360|TK1151|cDNA

CTGACAATCTTCAAGAGATCACACTATCTTCATGCTTCGATTTTTTTTAAATTTAGCTCGAATCTATCCGTATTTAAGCTGATCGTATCGGTTTAGTGCTCAATTTTGTGGTTGAGATTGTTAATAGTCATAGAATATCTGGTGCATGCATCGGTAGTTGTAAGATGGCTTCGACATTCCTTTCACTCCCCTCAGTCTCTCCATCTGCCGCCATGTCTGTGCAAGACAAGTGCAAAATGAAGCCTGGAACGTCTTTCCAA...

CDS

Download CDS FASTA

765 bp · TkA01G466360|TK1151|CDS

ATGGCTTCGACATTCCTTTCACTCCCCTCAGTCTCTCCATCTGCCGCCATGTCTGTGCAAGACAAGTGCAAAATGAAGCCTGGAACGTCTTTCCAAAGTGCTTTTTTTGGAAAGAACAAACAACAGCCCCTCTCCATGAAACCAAAGTCTCATGGTTGTGTAACAATGACTGTTGCCACAAAAGCTTCACGTTTTGACAACATAACAATGGCTCCCCCAGATCCAATTCTTGGAGTTTCAGAAGCATTCAAAGCTGACAC...

Protein

Download Protein FASTA

254 aa · TkA01G466360|TK1151|PROTEIN

MASTFLSLPSVSPSAAMSVQDKCKMKPGTSFQSAFFGKNKQQPLSMKPKSHGCVTMTVATKASRFDNITMAPPDPILGVSEAFKADTSDLKLNLGVGAYRTEELQPYVLKVVRKAENLMLERGENKEYLPIEGLAAFNKATTELLFGAVYKMQVATIQGNHKNIFNDAKVPWSEYRYYDPKTVGLDFDGMLEDIKVISQLLYKDKQLQRVLLCFFMGVLTTQQALIQLLNNGRKLLMSSKKRTIFPFFDVAYQV

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G466360`
TK1151 ID	TkA01G466360
OH-1004 ID	LXL04_010100
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	74.600
Protein coverage (%)	TK1151 99.606 / OH-1004 60.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G466360

Location Chr01:116847830-116849628 (+)

Description Similar to ASP5: Aspartate aminotransferase, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g31990`	Amino acid aminotransferase important for the metabolism of amino acids and Krebs-cycle related organic acids.	Recombinant expression, purification, and characterization of three isoenzymes of aspartate aminotransferase from Arabidopsis thaliana.1998 · DOI: 10.1006/prep.1997.0845

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_010100 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006103 2-oxoglutarate metabolic process Biological Process

GO:0006457 protein folding Biological Process

GO:0006520 amino acid metabolic process Biological Process

GO:0006531 aspartate metabolic process Biological Process

GO:0006533 L-aspartate catabolic process Biological Process

GO:0006536 glutamate metabolic process Biological Process

GO:0006869 lipid transport Biological Process

GO:0009409 response to cold Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0005759 mitochondrial matrix Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009501 amyloplast Cellular Component

KEGG gene cross-reference

ath:AT4G31990

ocu:100348732

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.969

Rank 1 · TkA01G466360 · TK1151

Mitochondrion0.035

Rank 2 · TkA01G466360 · TK1151

Cytoplasm0.016

Rank 3 · TkA01G466360 · TK1151

Nucleus0.012

Rank 4 · TkA01G466360 · TK1151

Cell membrane0.011

Rank 5 · TkA01G466360 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00155Aminotran_1_291-151 aa

PF00155Aminotran_1_2159-197 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G466360	`PF00155`	Aminotran_1_2	91	151	1.3e-14	54.9
TkA01G466360	`PF00155`	Aminotran_1_2	159	197	1.3e-14	54.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`P46248`	Arabidopsis thaliana	sp\|P46248\|AAT5_ARATH Aspartate aminotransferase, chloroplastic	52.100%	Swiss-Prot	High

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