LXL04_010100 | RubberDandelionOmics

Gene overview

LXL04_010100

Reference: OH-1004 Chr: Chr02 Coordinates: 140105101-140107620 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1248 bp · LXL04_010100|LXL04_010100|OH1004|cDNA

ATGACGTTGTTCAATGTCACTACACGCACCACACTTGTGTTTATCGTCGCTGTACCTAACTACCTTTCCACCGAAGAGTTCATCGCTTTATGTGGCTCTCACGTTGAGTACTTCTCCGATCTCTGTTTCATCAGAAATGATGCGATGGAAGATCGGTATAGCGTGCTTATTAAGCTAGTGAACCAAGCGGCTGCTGATGGATTCTGTTGCAGCTACAAGTCTATAATGGAAAGCGGTTTAGTCCTTATGAGGTATTATTG...

CDS

Download CDS FASTA

1248 bp · LXL04_010100|LXL04_010100|OH1004|CDS

ATGACGTTGTTCAATGTCACTACACGCACCACACTTGTGTTTATCGTCGCTGTACCTAACTACCTTTCCACCGAAGAGTTCATCGCTTTATGTGGCTCTCACGTTGAGTACTTCTCCGATCTCTGTTTCATCAGAAATGATGCGATGGAAGATCGGTATAGCGTGCTTATTAAGCTAGTGAACCAAGCGGCTGCTGATGGATTCTGTTGCAGCTACAAGTCTATAATGGAAAGCGGTTTAGTCCTTATGAGGTATTATTG...

Protein

Download Protein FASTA

415 aa · LXL04_010100|LXL04_010100|OH1004|PROTEIN

MTLFNVTTRTTLVFIVAVPNYLSTEEFIALCGSHVEYFSDLCFIRNDAMEDRYSVLIKLVNQAAADGFCCSYKSIMESGLVLMRYYWSFSSQNSGTEVCHIYFAQLVEYTDSAEIASIPQPGYTELPTCPVCLVVRYKHPDALLALQDYSVAMASTFLSVPSVSPSATMSVQDKCKMKSGTSFRSAFFGKDKQQPLSMKPKSHGHVTMTVASKASRFDSITMAPPDPILGVSEAFKADTSELKLNLGVGAYRTEELHPYV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_010100`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_010100

Location Chr02:140105101-140107620 (+)

Description Similar to ASP5: Aspartate aminotransferase, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g31990`	Amino acid aminotransferase important for the metabolism of amino acids and Krebs-cycle related organic acids.	Recombinant expression, purification, and characterization of three isoenzymes of aspartate aminotransferase from Arabidopsis thaliana.1998 · DOI: 10.1006/prep.1997.0845

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_010100 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006103 2-oxoglutarate metabolic process Biological Process

GO:0006457 protein folding Biological Process

GO:0006520 amino acid metabolic process Biological Process

GO:0006531 aspartate metabolic process Biological Process

GO:0006533 L-aspartate catabolic process Biological Process

GO:0006536 glutamate metabolic process Biological Process

GO:0006869 lipid transport Biological Process

GO:0009409 response to cold Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0005759 mitochondrial matrix Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009501 amyloplast Cellular Component

KEGG gene cross-reference

ath:AT4G31990

ocu:100348732

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.503

Rank 1 · LXL04_010100 · OH-1004

Nucleus0.324

Rank 2 · LXL04_010100 · OH-1004

Mitochondrion0.134

Rank 3 · LXL04_010100 · OH-1004

Endoplasmic reticulum0.106

Rank 4 · LXL04_010100 · OH-1004

Cell membrane0.085

Rank 5 · LXL04_010100 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07576.19BRAP27-116 aa

PF00155.28Aminotran_1_2243-310 aa

PF00155.28Aminotran_1_2312-406 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_010100	`PF07576.19`	BRAP2	7	116	2e-21	76.7
LXL04_010100	`PF00155.28`	Aminotran_1_2	243	310	5.3e-30	105.5
LXL04_010100	`PF00155.28`	Aminotran_1_2	312	406	5.3e-30	105.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`P46248`	Arabidopsis thaliana	Aspartate aminotransferase, chloroplastic	61.938%	Swiss-Prot	moderate database homology

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