RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G444990
Reference: TK1151 Chr: Chr01 Coordinates: 111368019-111369248 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

696 bp · TkA01G444990|TK1151|cDNA

AAAACCTTCCTATCACACGGATCAACTACAATTTCACTCGGATCGGATTGTATTCTCAGACGCACGCCTTCTCTGCACGCATGCTTCAAATGGCGCGGTCTTCAATGGCACGCCCTTCTCTGCACGCCTTCAACTCAAAATCGATTTAAATACTTCCATGGTTCAACTCAAAATCGACCTTCAAATGGCACTGCTTCCTCTCCCGTTTTCCAGTCTACAATCTCCGCGAACTCCTTCCCTCAGCCTCCACCGCCACCATC...

CDS

Download CDS FASTA

696 bp · TkA01G444990|TK1151|CDS

AAAACCTTCCTATCACACGGATCAACTACAATTTCACTCGGATCGGATTGTATTCTCAGACGCACGCCTTCTCTGCACGCATGCTTCAAATGGCGCGGTCTTCAATGGCACGCCCTTCTCTGCACGCCTTCAACTCAAAATCGATTTAAATACTTCCATGGTTCAACTCAAAATCGACCTTCAAATGGCACTGCTTCCTCTCCCGTTTTCCAGTCTACAATCTCCGCGAACTCCTTCCCTCAGCCTCCACCGCCACCATC...

Protein

Download Protein FASTA

231 aa · TkA01G444990|TK1151|PROTEIN

KTFLSHGSTTISLGSDCILRRTPSLHACFKWRGLQWHALLCTPSTQNRFKYFHGSTQNRPSNGTASSPVFQSTISANSFPQPPPPPSSHHLDGTTIAYPTFSVKYFPKIVSSLKYTVLRFHFSTELAGSFRVEKIQVHFPPLLPLKVHDDRHHRSISILSVICFYRFLPPGALFSRLAFANQLVMHQKKVLSMRNHQRSMLDSITRRISFLLFSRFLCRSTGFLPGRPIAI

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA01G444990
TK1151 IDTkA01G444990
OH-1004 IDLXL04_037394
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)90.000
Protein coverage (%)TK1151 17.316 / OH-1004 14.337
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G444990
LocationChr01:111368019-111369248 (+)
DescriptionSimilar to FREE1: Protein FREE1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_037394 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0007034 vacuolar transport Biological Process
GO:0009738 abscisic acid-activated signaling pathway Biological Process
GO:0009788 negative regulation of abscisic acid-activated signaling pathway Biological Process
GO:0015031 protein transport Biological Process
GO:0030100 regulation of endocytosis Biological Process
GO:0031623 receptor internalization Biological Process
GO:0032456 endocytic recycling Biological Process
GO:0036258 multivesicular body assembly Biological Process
GO:0051028 mRNA transport Biological Process
GO:0060586 multicellular organismal-level iron ion homeostasis Biological Process
GO:0070676 intralumenal vesicle formation Biological Process
GO:1900067 regulation of cellular response to alkaline pH Biological Process
KEGG gene cross-reference
ath:AT1G20110
hsa:55680
mmu:70432
uma:UMAG_03862
uma:UMAG_12183
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.481
Rank 1 · TkA01G444990 · TK1151
Cytoplasm0.405
Rank 2 · TkA01G444990 · TK1151
Mitochondrion0.096
Rank 3 · TkA01G444990 · TK1151
Cell membrane0.088
Rank 4 · TkA01G444990 · TK1151
Endoplasmic reticulum0.073
Rank 5 · TkA01G444990 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

View in Genome Browser