LXL04_037394 | RubberDandelionOmics

Gene overview

LXL04_037394

Reference: OH-1004 Chr: Chr09 Coordinates: 9128946-9131515 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

840 bp · LXL04_037394|LXL04_037394|OH1004|cDNA

atgcataaAAAAAAcgtttgcacatatgcaaagtttttggaaaaaaaaaagtcgttttttcggaaatttttttttgcgaccgggcttatatttgagcgatttttagccccccgaagtcggtttttcgaaaaagttaacgACACACGGATCAGTGACTCATCCGCCTATCCCACCTTCTCCGTTAAATACTTCCCCAAAATCATATCATCTCTCAAATACACCGTTCTCCGATTCCATTTCAACACTGAACTTGCCGGATC...

CDS

Download CDS FASTA

840 bp · LXL04_037394|LXL04_037394|OH1004|CDS

ATGCATAAAAAAAACGTTTGCACATATGCAAAGTTTTTGGAAAAAAAAAAGTCGTTTTTTCGGAAATTTTTTTTTGCGACCGGGCTTATATTTGAGCGATTTTTAGCCCCCCGAAGTCGGTTTTTCGAAAAAGTTAACGACACACGGATCAGTGACTCATCCGCCTATCCCACCTTCTCCGTTAAATACTTCCCCAAAATCATATCATCTCTCAAATACACCGTTCTCCGATTCCATTTCAACACTGAACTTGCCGGATC...

Protein

Download Protein FASTA

279 aa · LXL04_037394|LXL04_037394|OH1004|PROTEIN

MHKKNVCTYAKFLEKKKSFFRKFFFATGLIFERFLAPRSRFFEKVNDTRISDSSAYPTFSVKYFPKIISSLKYTVLRFHFNTELAGSFRVEKCEEIVDHQAVKYDGGAVRRSKLFPFTLFFFNLLFIMLNENEFESVKGSGGCVDAVSAAIETLEHHCRNCGDIFCDKCTQGRIALTAEENAQQVRVCDQCMAEVTQRLSHVNEVAANKASGFNRHEDLAKKLQEEMEKKRRATESKSNVANLQMKDVECPTCTVHLQVT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_037394`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_037394

Location Chr09:9128946-9131515 (+)

Description Similar to FREE1: Protein FREE1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g20110`	Endosomal sorting complex required for transport (ESCRT) component regulating multivesicular body (MVB) protein sorting and plant growth.	A unique plant ESCRT component, FREE1, regulates multivesicular body protein sorting and plant growth.2014 · DOI: 10.1016/j.cub.2014.09.014 Dual roles of an Arabidopsis ESCRT component FREE1 in regulating vacuolar protein transport and autophagic degradation.2015 · DOI: 10.1073/pnas.1421271112 FYVE1 is essential for vacuole biogenesis and intracellular trafficking in Arabidopsis.2015 · DOI: 10.1104/pp.114.253377 FYVE1/FREE1 Interacts with the PYL4 ABA Receptor and Mediates Its Delivery to the Vacuolar Degradation Pathway.2016 · DOI: 10.1105/tpc.16.00178 The effect of ABRE BINDING FACTOR 4-mediated FYVE1 on salt stress tolerance in Arabidopsis.2020 · DOI: 10.1016/j.plantsci.2020.110489

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_037394 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0007034 vacuolar transport Biological Process

GO:0009738 abscisic acid-activated signaling pathway Biological Process

GO:0009788 negative regulation of abscisic acid-activated signaling pathway Biological Process

GO:0015031 protein transport Biological Process

GO:0030100 regulation of endocytosis Biological Process

GO:0031623 receptor internalization Biological Process

GO:0032456 endocytic recycling Biological Process

GO:0036258 multivesicular body assembly Biological Process

GO:0051028 mRNA transport Biological Process

GO:0060586 multicellular organismal-level iron ion homeostasis Biological Process

GO:0070676 intralumenal vesicle formation Biological Process

GO:1900067 regulation of cellular response to alkaline pH Biological Process

KEGG gene cross-reference

ath:AT1G20110

hsa:55680

mmu:70432

uma:UMAG_03862

uma:UMAG_12183

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.496

Rank 1 · LXL04_037394 · OH-1004

Nucleus0.354

Rank 2 · LXL04_037394 · OH-1004

Mitochondrion0.121

Rank 3 · LXL04_037394 · OH-1004

Cell membrane0.091

Rank 4 · LXL04_037394 · OH-1004

Golgi apparatus0.074

Rank 5 · LXL04_037394 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01363.28FYVE155-196 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_037394	`PF01363.28`	FYVE	155	196	2.1e-12	47.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9ASS2`	Arabidopsis thaliana	Protein FREE1	65.079%	Swiss-Prot	weak database homology

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