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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G438850
Reference: TK1151 Chr: Chr01 Coordinates: 109661073-109668276 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2195 bp · TkA01G438850|TK1151|cDNA

ATAAAACCCATTCGGCGGAAAAAAGAAGAAAAGACGACTAAAGCAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTACGCATTACAGAGAGTAGTAGGAAAGGATTCAAACATAGCGAGACAAAAGTGCAAAAGACCATATCGACAAATTCTAAAAGAATTCGTCTCTAGTGGACCGCCGGCCTCTGGATTTGCGACTTTGAAGAAAAACAGCATCTGATCAATCGGCGGGAAAGTTGAAGAAGCAAAAGTTCAGCG...

CDS

Download CDS FASTA

1224 bp · TkA01G438850|TK1151|CDS

ATGTCACAAAACATGACCATATCGAAACTTGAAGCTGGGATCAATGCATCCAACAATAACAGTAATCGATATGCGAAGTTGTTGGAGGGTTCTTGGATAGCTCAGTTCCGATATGGATCTAATCCTTGGATGGCTAGATATGTTTACAGTGTGATGTTTTTGTTAGCGAATTTGCTTGCTTGGGCTGTTCGTGACTATGGCCCCACCGCTTTGACCGAAATGAACAAATTGAAAACTTGTGAACGTGGTGAAGACTGTTT...

Protein

Download Protein FASTA

407 aa · TkA01G438850|TK1151|PROTEIN

MSQNMTISKLEAGINASNNNSNRYAKLLEGSWIAQFRYGSNPWMARYVYSVMFLLANLLAWAVRDYGPTALTEMNKLKTCERGEDCLGTEGVLRVSLGCFIFFFTMFLSTSGTSKLHGRKELWHSGWWSAKIVLMITLIVLPFFLPTKLILIYGDIAHFGAGVFLLIQLISIISFITWLNDCCLSEKYAERCHIHFMLLATTAYVVCILGIILMYIWYTPQPTCLLNIFFISWTLVLLQLMTSVSLHPKVSAGFLTPGFM...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G438850
TK1151 IDTkA01G438850
OH-1004 IDLXL04_028005
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)82.400
Protein coverage (%)TK1151 98.771 / OH-1004 99.756
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G438850
LocationChr01:109661073-109668276 (-)
DescriptionSimilar to serinc: Probable serine incorporator
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_028005 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006563 L-serine metabolic process Biological Process
GO:0006658 phosphatidylserine metabolic process Biological Process
GO:0006665 sphingolipid metabolic process Biological Process
GO:0008654 phospholipid biosynthetic process Biological Process
GO:0017121 plasma membrane phospholipid scrambling Biological Process
GO:0044091 membrane biogenesis Biological Process
GO:0140374 antiviral innate immune response Biological Process
GO:0000139 Golgi membrane Cellular Component
GO:0005789 endoplasmic reticulum membrane Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0016020 membrane Cellular Component
GO:0048471 perinuclear region of cytoplasm Cellular Component
KEGG gene cross-reference
ddi:DDB_G0281099
hsa:10955
mmu:56442
pon:100173651
rno:294421
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.654
Rank 1 · TkA01G438850 · TK1151
Cytoplasm0.179
Rank 2 · TkA01G438850 · TK1151
Endoplasmic reticulum0.126
Rank 3 · TkA01G438850 · TK1151
Lysosome / Vacuole0.111
Rank 4 · TkA01G438850 · TK1151
Golgi apparatus0.071
Rank 5 · TkA01G438850 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03348Serinc40-321 aa
PF06749DUF121896-119 aa
PF01616Orbi_NS3114-140 aa
PF27917TMEM88134-154 aa
PF15820ECSCR156-175 aa
PF06749DUF1218163-215 aa
PF01616Orbi_NS3194-210 aa
PF27917TMEM88250-308 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G438850PF03348Serinc403216.4e-74250.2
TkA01G438850PF06749DUF1218961190.1313.5
TkA01G438850PF01616Orbi_NS31141400.2411.7
TkA01G438850PF27917TMEM881341540.01516.2
TkA01G438850PF15820ECSCR1561750.2112.2
TkA01G438850PF06749DUF12181632150.1313.5
TkA01G438850PF01616Orbi_NS31942100.2411.7
TkA01G438850PF27917TMEM882503080.01516.2
TkA01G438850PF06749DUF12182813080.1313.5
TkA01G438850PF01616Orbi_NS32823620.2411.7
TkA01G438850PF15820ECSCR2933500.2112.2
TkA01G438850PF06749DUF12182963640.1313.5
TkA01G438850PF03348Serinc3214016.4e-74250.2
TkA01G438850PF06749DUF12183764020.1313.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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