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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G437690
Reference: TK1151 Chr: Chr01 Coordinates: 109343317-109355000 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

8022 bp · TkA01G437690|TK1151|cDNA

ATGGACTTTGTTTTCCGCCACACATCTGATCATGCCCATCACCCGCCACCGGAACCGTCAACAAGCTCACCGACCTCACCTGCCCAGCCTCCACCACAACAACCATTTTCCCAAGAGGAGCCCGAGTACTTGGCTCGCTACCTTGTTGTTAAACACTCATGGCGTGGTCGGTACAAGAGGATACTTTGTATATCAAATTACACCCTAACAACTCTAGACCCTACGACATTATCAGTGACCAACTCTTACGACGTGAGCAA...

CDS

Download CDS FASTA

8022 bp · TkA01G437690|TK1151|CDS

ATGGACTTTGTTTTCCGCCACACATCTGATCATGCCCATCACCCGCCACCGGAACCGTCAACAAGCTCACCGACCTCACCTGCCCAGCCTCCACCACAACAACCATTTTCCCAAGAGGAGCCCGAGTACTTGGCTCGCTACCTTGTTGTTAAACACTCATGGCGTGGTCGGTACAAGAGGATACTTTGTATATCAAATTACACCCTAACAACTCTAGACCCTACGACATTATCAGTGACCAACTCTTACGACGTGAGCAA...

Protein

Download Protein FASTA

2673 aa · TkA01G437690|TK1151|PROTEIN

MDFVFRHTSDHAHHPPPEPSTSSPTSPAQPPPQQPFSQEEPEYLARYLVVKHSWRGRYKRILCISNYTLTTLDPTTLSVTNSYDVSKDYEGASPVIGKDENTMEFTVSVRTDGRGKFKATKFSSRYRASILTELHRIRWNRLGTLGEFPVLHLRRKTAEWVPLTMKVTYVGVELTELKSGDLRWCLDFRDMASPAIILLSDAYGRKNSEPGGFVLCALYGRKCKAFQAAPGTSNSTIVGNLKKTAKSTVGVLLSVESSQS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G437690
TK1151 IDTkA01G437690
OH-1004 IDLXL04_002591
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.200
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G437690
LocationChr01:109343317-109355000 (-)
DescriptionSimilar to GRV2: DnaJ homolog subfamily C GRV2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g26890 Required for endosome formation, vacuolar protein sorting and determination of the embryo growth axis.
The gravitropism defective 2 mutants of Arabidopsis are deficient in a protein implicated in endocytosis in Caenorhabditis elegans.2004 · DOI: 10.1104/pp.104.050583
Arabidopsis KAM2/GRV2 is required for proper endosome formation and functions in vacuolar sorting and determination of the embryo growth axis.2007 · DOI: 10.1105/tpc.106.046631
Arabidopsis vacuolar sorting mutants (green fluorescent seed) can be identified efficiently by secretion of vacuole-targeted green fluorescent protein in their seeds.2007 · DOI: 10.1105/tpc.106.045997
The GRV2/RME-8 protein of Arabidopsis functions in the late endocytic pathway and is required for vacuolar membrane flow.2008 · DOI: 10.1111/j.1365-313x.2007.03314.x

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_002591 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000578 embryonic axis specification Biological Process
GO:0006260 DNA replication Biological Process
GO:0006457 protein folding Biological Process
GO:0006623 protein targeting to vacuole Biological Process
GO:0006897 endocytosis Biological Process
GO:0006898 receptor-mediated endocytosis Biological Process
GO:0007032 endosome organization Biological Process
GO:0007033 vacuole organization Biological Process
GO:0009408 response to heat Biological Process
GO:0009638 phototropism Biological Process
GO:0009660 amyloplast organization Biological Process
GO:0009793 embryo development ending in seed dormancy Biological Process
KEGG gene cross-reference
ath:AT2G26890
hsa:23317
pon:100174139
reh:H16_A3088
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.522
Rank 1 · TkA01G437690 · TK1151
Nucleus0.230
Rank 2 · TkA01G437690 · TK1151
Golgi apparatus0.186
Rank 3 · TkA01G437690 · TK1151
Cell membrane0.140
Rank 4 · TkA01G437690 · TK1151
Endoplasmic reticulum0.108
Rank 5 · TkA01G437690 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF19432RME-8_N46-138 aa
PF29707RME-8_2nd49-84 aa
PF29707RME-8_2nd160-251 aa
PF29707RME-8_2nd336-391 aa
PF29708RME-8_4th435-483 aa
PF29708RME-8_4th524-577 aa
PF25598ARM_PUB529-578 aa
PF25598ARM_PUB617-702 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G437690PF19432RME-8_N461382.9e-2073.3
TkA01G437690PF29707RME-8_2nd49840.0009220.1
TkA01G437690PF29707RME-8_2nd1602510.0009220.1
TkA01G437690PF29707RME-8_2nd3363910.0009220.1
TkA01G437690PF29708RME-8_4th4354830.06713.7
TkA01G437690PF29708RME-8_4th5245770.06713.7
TkA01G437690PF25598ARM_PUB5295780.005416.9
TkA01G437690PF25598ARM_PUB6177020.005416.9
TkA01G437690PF14237GYF_2117212207.9e-1451.9
TkA01G437690PF25598ARM_PUB123613180.005416.9
TkA01G437690PF00226DnaJ153615761.1e-1042.2
TkA01G437690PF25598ARM_PUB170617780.005416.9
TkA01G437690PF15625CC2D2AN-C2193019760.1912.1
TkA01G437690PF25598ARM_PUB207221110.005416.9
TkA01G437690PF25598ARM_PUB235324330.005416.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
F4IVL6Arabidopsis thalianasp|F4IVL6|GRV2_ARATH DnaJ homolog subfamily C GRV273.500%Swiss-ProtHigh

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