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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G436450
Reference: TK1151 Chr: Chr01 Coordinates: 109050865-109058293 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

4721 bp · TkA01G436450|TK1151|cDNA

ATAACGTTTTGCTCAAAAAAGTTTAGAGAGAGAAAGGCAGAAAGCCCGCCATTAATGCTGAGCTCAACCACCAGTCCTGTAAATGTGTCTACATTATACATTGCAGAGTACGATTACAAGCTTATTTTCTTCGTGACCTTATCTACTTGATCAGGTTTTCCTTCAAAACTAGGGTTTTTTATGTCAATGTGCTGTTAAGAATGTGGAATTCGGCGGAGAATCTGTCAGTGAGATCGTCGTCATTTCGGGAAGACGGTGAT...

CDS

Download CDS FASTA

3924 bp · TkA01G436450|TK1151|CDS

ATGTTCATGTCGGTAGTAGAGCATTGCCAACCATTACAAATTTCATTGTTGTTAATGACAGAGGCTTTCTTAAGACAATTGAAGATATACAAAGGGAAGCGAAGAAAGCTCACAATTTTGGATGATGTCAGCGGTATAATTAGACCTTCAAGAATGACACTTCTTCTTGGTCCTCCAAGCTCTGGTAAGACAACTCTAATGTTAGCTCTAGCTGGACGCCTTGGACATCATTTGAAGATGTCAGGAAAAATCACCTACAA...

Protein

Download Protein FASTA

1307 aa · TkA01G436450|TK1151|PROTEIN

MFMSVVEHCQPLQISLLLMTEAFLRQLKIYKGKRRKLTILDDVSGIIRPSRMTLLLGPPSSGKTTLMLALAGRLGHHLKMSGKITYNGHGLKEFVPQRTAAYVSQQDWHIGEMTVRETLDLSARCQGVGFKYDMLMELTRREKIAGIRPDEDLDIFMKALALGGHETTLVVEYILKILGLDTCANTLVGDEMLRGISGGQKKRLTTGELLAGPSRALLMDEISNGLDSSTTYQIIKYLRHSTRALDGTTVISLLQPAPET...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G436450
TK1151 IDTkA01G436450
OH-1004 IDLXL04_002604
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)99.900
Protein coverage (%)TK1151 98.623 / OH-1004 88.835
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G436450
LocationChr01:109050865-109058293 (-)
DescriptionSimilar to ABCG32: ABC transporter G family member 32
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g26910 May be a general defense protein (By similarity).
A member of the PLEIOTROPIC DRUG RESISTANCE family of ATP binding cassette transporters is required for the formation of a functional cuticle in Arabidopsis.2011 · DOI: 10.1105/tpc.111.083121

Rice

Reference gene IDPossible functionPapers / DOI
Os01g0177900 May be a general defense protein. No verified direct reference in this release
Os01g0609300 May be a general defense protein. No verified direct reference in this release
UniProt: A2WSH0 May be a general defense protein. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_002604 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009914 hormone transport Biological Process
GO:0080051 cutin transport Biological Process
GO:2000032 regulation of secondary shoot formation Biological Process
GO:0005777 peroxisome Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0016020 membrane Cellular Component
GO:0005524 ATP binding Molecular Function
GO:0016887 ATP hydrolysis activity Molecular Function
GO:0140359 ABC-type transporter activity Molecular Function
KEGG gene cross-reference
ath:AT2G26910
dosa:Os01g0177900
dosa:Os01g0609900
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.506
Rank 1 · TkA01G436450 · TK1151
Endoplasmic reticulum0.185
Rank 2 · TkA01G436450 · TK1151
Lysosome / Vacuole0.168
Rank 3 · TkA01G436450 · TK1151
Cytoplasm0.109
Rank 4 · TkA01G436450 · TK1151
Golgi apparatus0.082
Rank 5 · TkA01G436450 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03796DnaB_C37-76 aa
PF25199nSTAND_NTPase537-74 aa
PF00005ABC_tran40-222 aa
PF03193RsgA_GTPase41-74 aa
PF09818ABC_ATPase41-78 aa
PF13481AAA_2543-71 aa
PF20720nSTAND346-73 aa
PF02367TsaE46-77 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G436450PF03796DnaB_C37760.1811.9
TkA01G436450PF25199nSTAND_NTPase537740.1812.3
TkA01G436450PF00005ABC_tran402221.5e-36126.7
TkA01G436450PF03193RsgA_GTPase41740.02515.1
TkA01G436450PF09818ABC_ATPase41780.2211.2
TkA01G436450PF13481AAA_2543710.0004620.6
TkA01G436450PF20720nSTAND346730.0215.3
TkA01G436450PF02367TsaE46770.06513.9
TkA01G436450PF03215Rad1747790.1113.2
TkA01G436450PF13191AAA_1648874.1e-0628.1
TkA01G436450PF13555AAA_2948706.4e-0626.6
TkA01G436450PF13604AAA_30501190.001119.5
TkA01G436450PF13401AAA_2250770.001319.8
TkA01G436450PF18751Ploopntkinase350740.4610.7
TkA01G436450PF13476AAA_2351770.004318.4
TkA01G436450PF13173AAA_1451740.06214.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
O81016Arabidopsis thalianasp|O81016|AB32G_ARATH ABC transporter G family member 3274.900%Swiss-ProtHigh
Q8GU87Oryza sativa subsp. japonicasp|Q8GU87|AB31G_ORYSJ ABC transporter G family member 3173.200%Swiss-ProtHigh
Q0JLC5Oryza sativa subsp. japonicasp|Q0JLC5|AB36G_ORYSJ ABC transporter G family member 3662.500%Swiss-ProtHigh
A2WSH0Oryza sativa subsp. indicasp|A2WSH0|AB36G_ORYSI ABC transporter G family member 3662.400%Swiss-ProtHigh

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