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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G435990
Reference: TK1151 Chr: Chr01 Coordinates: 108924730-108926572 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

723 bp · TkA01G435990|TK1151|cDNA

ATGTATGGCAAAAATGGGGCTCTCGAAGATGCACGAAAGGTATTCGACAATATGCCTGAAAGAAACGTAGTCACCTGGAACGCAATGATGGTAACCTATGCTCAAAACGGTATGCATGAAGAAGCAATCCGTCTCTTTCATGACATGAGAACACAAGGGATTCAACCCACTGTGATAACATTCACGAGTGTGTTATCAGTATGTCGACACTGTGGGCTTGCAAATGAAGGTTTGGGGGTTTTCGTTGATATGATTAGAAA...

CDS

Download CDS FASTA

723 bp · TkA01G435990|TK1151|CDS

ATGTATGGCAAAAATGGGGCTCTCGAAGATGCACGAAAGGTATTCGACAATATGCCTGAAAGAAACGTAGTCACCTGGAACGCAATGATGGTAACCTATGCTCAAAACGGTATGCATGAAGAAGCAATCCGTCTCTTTCATGACATGAGAACACAAGGGATTCAACCCACTGTGATAACATTCACGAGTGTGTTATCAGTATGTCGACACTGTGGGCTTGCAAATGAAGGTTTGGGGGTTTTCGTTGATATGATTAGAAA...

Protein

Download Protein FASTA

240 aa · TkA01G435990|TK1151|PROTEIN

MYGKNGALEDARKVFDNMPERNVVTWNAMMVTYAQNGMHEEAIRLFHDMRTQGIQPTVITFTSVLSVCRHCGLANEGLGVFVDMIRKYGVKPSMEHFGCVAGLLSKCGNNEAFRFVESMQFEPDSHILGCLLDSCRENSGSETDVVKYLMEKLMKIEPMNSGNYVAVSNAYAGKGMWNEVSELRSLMRENGIKKSPGCSWLQIGKEVHVFVANDRSQSRTDEIYSTLALLRKEMQANTNL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G435990
TK1151 IDTkA01G435990
OH-1004 IDLXL04_002611
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)84.600
Protein coverage (%)TK1151 100.000 / OH-1004 26.519
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G435990
LocationChr01:108924730-108926572 (+)
DescriptionSimilar to CRR21: Pentatricopeptide repeat-containing protein At5g55740, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g55740 Plays a major role in chloroplast RNA editing.
Conserved domain structure of pentatricopeptide repeat proteins involved in chloroplast RNA editing.2007 · DOI: 10.1073/pnas.0700865104
At1g20230 Pentatricopeptide repeat-containing protein At1g20230. No verified direct reference in this release
At3g49142 Putative pentatricopeptide repeat-containing protein At3g49142. No verified direct reference in this release
At2g13600 Pentatricopeptide repeat-containing protein At2g13600. No verified direct reference in this release
At3g13770 Putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_002611 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009451 RNA modification Biological Process
GO:0016556 mRNA modification Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0003729 mRNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT1G18485
ath:AT1G19720
ath:AT4G21300
ath:AT5G55740
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.594
Rank 1 · TkA01G435990 · TK1151
Plastid0.188
Rank 2 · TkA01G435990 · TK1151
Nucleus0.092
Rank 3 · TkA01G435990 · TK1151
Cytoplasm0.036
Rank 4 · TkA01G435990 · TK1151
Peroxisome0.007
Rank 5 · TkA01G435990 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01535PPR2-23 aa
PF13041PPR_22-23 aa
PF12854PPR_12-18 aa
PF13812PPR_34-20 aa
PF13428TPR_144-17 aa
PF13041PPR_221-68 aa
PF13812PPR_321-68 aa
PF12854PPR_121-50 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G435990PF01535PPR2236.2e-2380.1
TkA01G435990PF13041PPR_22238.2e-2381.0
TkA01G435990PF12854PPR_12183e-1143.6
TkA01G435990PF13812PPR_34202.6e-1144.1
TkA01G435990PF13428TPR_144170.2912.7
TkA01G435990PF13041PPR_221688.2e-2381.0
TkA01G435990PF13812PPR_321682.6e-1144.1
TkA01G435990PF12854PPR_121503e-1143.6
TkA01G435990PF01535PPR24546.2e-2380.1
TkA01G435990PF29070MSC6_N251114.5e-0523.5
TkA01G435990PF13428TPR_1425510.2912.7
TkA01G435990PF23276TPR_2426672.9e-0627.9
TkA01G435990PF20431E_motif32551.6e-2073.8
TkA01G435990PF17177PPR_long391130.002118.2
TkA01G435990PF12854PPR_153683e-1143.6
TkA01G435990PF28035Cys_rich_PSPA7_267653720.4411.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FM64Arabidopsis thalianasp|Q9FM64|PP431_ARATH Pentatricopeptide repeat-containing protein At5g55740, chloroplastic44.700%Swiss-ProtMedium
Q9LNU6Arabidopsis thalianasp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g2023040.000%Swiss-ProtMedium
P0C899Arabidopsis thalianasp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing protein At3g4914240.400%Swiss-ProtMedium
Q9SIT7Arabidopsis thalianasp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g1360043.000%Swiss-ProtMedium
Q9LIC3Arabidopsis thalianasp|Q9LIC3|PP227_ARATH Putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial40.000%Swiss-ProtMedium

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