TkA01G424810 | RubberDandelionOmics

Gene overview

TkA01G424810

Reference: TK1151 Chr: Chr01 Coordinates: 106075844-106080424 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

552 bp · TkA01G424810|TK1151|cDNA

ATGAGCCAACAGAGATTTGTTTGGGTGGTCCGGCCACCTACCGGACAAATTAAAGACGGGTCTTTTTTCAGATCCGGTCATTCCGGTGTACTAAATGGTCAAGCAGATTATCTCCCCGACGGGTTCCTGACCCGAACCAAGAAATTGGGTTTTGTTGTGCCTTCATGGGCCCCACAGGTGGAGATTTTGAACCACGCATCGGTTGGAGGGTTTCTAACGCACTGTGGGTGGAACTCAATATTAGAGAGCATTAGCAGTGG...

CDS

Download CDS FASTA

552 bp · TkA01G424810|TK1151|CDS

ATGAGCCAACAGAGATTTGTTTGGGTGGTCCGGCCACCTACCGGACAAATTAAAGACGGGTCTTTTTTCAGATCCGGTCATTCCGGTGTACTAAATGGTCAAGCAGATTATCTCCCCGACGGGTTCCTGACCCGAACCAAGAAATTGGGTTTTGTTGTGCCTTCATGGGCCCCACAGGTGGAGATTTTGAACCACGCATCGGTTGGAGGGTTTCTAACGCACTGTGGGTGGAACTCAATATTAGAGAGCATTAGCAGTGG...

Protein

Download Protein FASTA

183 aa · TkA01G424810|TK1151|PROTEIN

MSQQRFVWVVRPPTGQIKDGSFFRSGHSGVLNGQADYLPDGFLTRTKKLGFVVPSWAPQVEILNHASVGGFLTHCGWNSILESISSGVPMIAWALYAEQRMNAAMLTEELKVVVRPEVLPAKKEVGREEVEKMVWCLMEGEEGKTMTKRVERLKEGAEEAISLNGTSYISMCRFIEDCVSQIS

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G424810`
TK1151 ID	TkA01G424810
OH-1004 ID	LXL04_002637
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	95.600
Protein coverage (%)	TK1151 100.000 / OH-1004 38.229 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G424810

Location Chr01:106075844-106080424 (+)

Description Similar to GT5: Anthocyanidin 3-O-glucosyltransferase 5

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g50740`	UDP-glycosyltransferase that glucosylates coniferyl aldehyde to form coniferyl aldehyde 4-O-glucoside.	Identification and characterisation of Arabidopsis glycosyltransferases capable of glucosylating coniferyl aldehyde and sinapyl aldehyde.2005 · DOI: 10.1016/j.febslet.2005.04.016
`At5g66690`	Involved in the O-glucosylation of monolignols (alcohol monomers of lignin).	Arabidopsis glucosyltransferases with activities toward both endogenous and xenobiotic substrates.2003 · DOI: 10.1007/s00425-002-0969-0 Identification and characterisation of Arabidopsis glycosyltransferases capable of glucosylating coniferyl aldehyde and sinapyl aldehyde.2005 · DOI: 10.1016/j.febslet.2005.04.016 The glucosyltransferase UGT72E2 is responsible for monolignol 4-O-glucoside production in Arabidopsis thaliana.2006 · DOI: 10.1111/j.1365-313x.2006.02872.x Enzymatic and metabolic engineering for efficient production of syringin, sinapyl alcohol 4-O-glucoside, in Arabidopsis thaliana.2014 · DOI: 10.1016/j.phytochem.2014.03.003
`At5g26310`	Involved in the O-glucosylation of monolignols (alcohol monomers of lignin).	Enzymatic and metabolic engineering for efficient production of syringin, sinapyl alcohol 4-O-glucoside, in Arabidopsis thaliana.2014 · DOI: 10.1016/j.phytochem.2014.03.003

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_002637 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009636 response to toxic substance Biological Process

GO:0009718 anthocyanin-containing compound biosynthetic process Biological Process

GO:0009808 lignin metabolic process Biological Process

GO:0005634 nucleus Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0008194 UDP-glycosyltransferase activity Molecular Function

GO:0047209 coniferyl-alcohol glucosyltransferase activity Molecular Function

GO:0047213 anthocyanidin 3-O-glucosyltransferase activity Molecular Function

GO:0047218 hydroxycinnamate 4-beta-glucosyltransferase activity Molecular Function

GO:0050505 hydroquinone glucosyltransferase activity Molecular Function

KEGG gene cross-reference

ag:CAC35167

ath:AT2G18570

ath:AT3G50740

ath:AT5G66690

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Peroxisome0.470

Rank 1 · TkA01G424810 · TK1151

Cytoplasm0.326

Rank 2 · TkA01G424810 · TK1151

Nucleus0.088

Rank 3 · TkA01G424810 · TK1151

Mitochondrion0.086

Rank 4 · TkA01G424810 · TK1151

Plastid0.071

Rank 5 · TkA01G424810 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00201UDPGT52-109 aa

PF04101Glyco_tran_28_C72-114 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G424810	`PF00201`	UDPGT	52	109	4.5e-18	66.0
TkA01G424810	`PF04101`	Glyco_tran_28_C	72	114	0.29	11.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q94A84`	Arabidopsis thaliana	sp\|Q94A84\|U72E1_ARATH UDP-glycosyltransferase 72E1	51.700%	Swiss-Prot	High
`Q9LVR1`	Arabidopsis thaliana	sp\|Q9LVR1\|U72E2_ARATH UDP-glycosyltransferase 72E2	48.000%	Swiss-Prot	Medium
`O81498`	Arabidopsis thaliana	sp\|O81498\|U72E3_ARATH UDP-glycosyltransferase 72E3	48.000%	Swiss-Prot	Medium

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