Gene Card
Gene overview
cDNA / CDS / Protein Sequences
423 bp · TkA01G415340|TK1151|cDNA
ATGACACTAATTGGTACGCCATCGAGTCTTGTATATACAATACAAGACATGTCAAGATTTGGCCATCCAATCATCCTGAGTAGTTCACATGATCTCTCCACGAGTAAACTCTCTTCAATAGAGTCGGGATGTTGCATACCACCATCGATTTGTGACATGAAATATGTTAATGCGACATGCTGGAGAAAGAACCACATAGGTTATAGAGGCTCAAATGGTGCGTATGATATTGATTGTGATTTATGGCAAAACGATGCTAC...
423 bp · TkA01G415340|TK1151|CDS
ATGACACTAATTGGTACGCCATCGAGTCTTGTATATACAATACAAGACATGTCAAGATTTGGCCATCCAATCATCCTGAGTAGTTCACATGATCTCTCCACGAGTAAACTCTCTTCAATAGAGTCGGGATGTTGCATACCACCATCGATTTGTGACATGAAATATGTTAATGCGACATGCTGGAGAAAGAACCACATAGGTTATAGAGGCTCAAATGGTGCGTATGATATTGATTGTGATTTATGGCAAAACGATGCTAC...
Protein
Download Protein FASTA140 aa · TkA01G415340|TK1151|PROTEIN
MTLIGTPSSLVYTIQDMSRFGHPIILSSSHDLSTSKLSSIESGCCIPPSICDMKYVNATCWRKNHIGYRGSNGAYDIDCDLWQNDATKLCYDCNACRKGFIRTLREKWYKLGVFLVVVTILLIASHVLLLITTMWERHAR
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA01G415340 |
|---|---|
| TK1151 ID | TkA01G415340 |
| OH-1004 ID | LXL04_002871 |
| Relationship / confidence | Rbh Below Probable Coverage Or Synteny Threshold / Review |
| Protein identity (%) | 99.100 |
| Protein coverage (%) | TK1151 82.143 / OH-1004 40.351Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA01G415340 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr01:103654726-103655280 (+) | |||||||||
| Description | Similar to TET15: Tetraspanin-15 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0009734 auxin-activated signaling pathway Biological Process GO:0005576 extracellular region Cellular Component GO:0005829 cytosol Cellular Component GO:0005886 plasma membrane Cellular Component GO:0009506 plasmodesma Cellular Component GO:0009507 chloroplast Cellular Component | |||||||||
| KEGG gene cross-reference | ath:AT2G19580 ath:AT3G45600 ath:AT4G28050 ath:AT4G30430 ath:AT5G57810 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00335Tetraspanin33-129 aaPF06749DUF121891-138 aaPF24400DUF7544100-133 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA01G415340 | PF00335 | Tetraspanin | 33 | 129 | 5.2e-07 | 30.3 |
| TkA01G415340 | PF06749 | DUF1218 | 91 | 138 | 0.01 | 17.0 |
| TkA01G415340 | PF24400 | DUF7544 | 100 | 133 | 0.081 | 12.9 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.