TkA01G412870 | RubberDandelionOmics

Gene overview

TkA01G412870

Reference: TK1151 Chr: Chr01 Coordinates: 103013321-103015597 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

878 bp · TkA01G412870|TK1151|cDNA

CAATTAATTCAGTTAAGTTACTTCAATGTGGTTTCCAACTTTTTACCCTGCTATGTTGATTGAAACCTGTAGTGTGATAGGGCTGAATTTCGATTTCGTGGTGCTAAATTTGACTAAGCATTCGTCGTATCTGATATACAACGCCTCCGTCTTCTTTAGCTCCGCCGTTCAACGTCAGTATCACCAGAAATATGGCTTCAACGAGATGATACCTGTAGCAGCAAACGATGTTGCTTTCTCCATTCACACAGTTGTCCTAA...

CDS

Download CDS FASTA

738 bp · TkA01G412870|TK1151|CDS

ATGTGGTTTCCAACTTTTTACCCTGCTATGTTGATTGAAACCTGTAGTGTGATAGGGCTGAATTTCGATTTCGTGGTGCTAAATTTGACTAAGCATTCGTCGTATCTGATATACAACGCCTCCGTCTTCTTTAGCTCCGCCGTTCAACGTCAGTATCACCAGAAATATGGCTTCAACGAGATGATACCTGTAGCAGCAAACGATGTTGCTTTCTCCATTCACACAGTTGTCCTAACTGCATTTACCTTATTCCAGATAGC...

Protein

Download Protein FASTA

245 aa · TkA01G412870|TK1151|PROTEIN

MWFPTFYPAMLIETCSVIGLNFDFVVLNLTKHSSYLIYNASVFFSSAVQRQYHQKYGFNEMIPVAANDVAFSIHTVVLTAFTLFQIAIYDRGVQKVSKTSISILSVAWLTVIICVFIAIPNHSWLWLVSCFSTLQVVMTVIKYIPQAVMNFKRKSTVGFSIGNILLDLLGGLANYGQMVVQSIDQHSLVNFYGNIGKTLLSLVSIFFDILFILQHYVVYPAHKSVKPHSSDLVSQEPLVTSFKDA

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G412870`
TK1151 ID	TkA01G412870
OH-1004 ID	LXL04_006080
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	92.300
Protein coverage (%)	TK1151 99.592 / OH-1004 91.450 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G412870

Location Chr01:103013321-103015597 (+)

Description Similar to At5g40670: Cystinosin homolog

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g40670`	Thought to transport cystine out of lysosomes.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_006080 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006520 amino acid metabolic process Biological Process

GO:0006749 glutathione metabolic process Biological Process

GO:0010730 negative regulation of hydrogen peroxide biosynthetic process Biological Process

GO:0010918 positive regulation of mitochondrial membrane potential Biological Process

GO:0015031 protein transport Biological Process

GO:0015811 L-cystine transport Biological Process

GO:0035623 renal D-glucose absorption Biological Process

GO:0035672 oligopeptide transmembrane transport Biological Process

GO:0042438 melanin biosynthetic process Biological Process

GO:0046034 ATP metabolic process Biological Process

GO:0048021 regulation of melanin biosynthetic process Biological Process

GO:0048731 system development Biological Process

KEGG gene cross-reference

ath:AT5G40670

bta:613527

ddi:DDB_G0279445

hsa:1497

mmu:83429

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.416

Rank 1 · TkA01G412870 · TK1151

Cytoplasm0.243

Rank 2 · TkA01G412870 · TK1151

Golgi apparatus0.203

Rank 3 · TkA01G412870 · TK1151

Cell membrane0.192

Rank 4 · TkA01G412870 · TK1151

Endoplasmic reticulum0.165

Rank 5 · TkA01G412870 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04193PQ-loop16-44 aa

PF20237DUF659441-140 aa

PF04193PQ-loop107-118 aa

PF04193PQ-loop128-185 aa

PF04193PQ-loop182-208 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G412870	`PF04193`	PQ-loop	16	44	4.1e-17	62.4
TkA01G412870	`PF20237`	DUF6594	41	140	1.2	9.7
TkA01G412870	`PF04193`	PQ-loop	107	118	4.1e-17	62.4
TkA01G412870	`PF04193`	PQ-loop	128	185	4.1e-17	62.4
TkA01G412870	`PF04193`	PQ-loop	182	208	4.1e-17	62.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`P57758`	Arabidopsis thaliana	sp\|P57758\|CTNS_ARATH Cystinosin homolog	64.900%	Swiss-Prot	High

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