TkA01G374450 | RubberDandelionOmics

Gene overview

TkA01G374450

Reference: TK1151 Chr: Chr01 Coordinates: 93411931-93412722 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

423 bp · TkA01G374450|TK1151|cDNA

ATGGGGAAACCGTTGTTCTACGAGATCCTTGAAAAACCTGCTACTAGTTGTATCATAGGATTATGCACTTTAATTTGGTTCTACATACAGAAAAAAAATATCGGGTATTCTCATGTGGGTTTGAATTATGAGACGGCTGTCGAAGGTCACCATTGGCGGATCATAACCTCTGCGATGTCGCATATAAGTGTTCTTCATCTTGTTTTCAACATGAGTGCACTTTGGAGCCTTGGCGTTGTTGAGCAATTAGGGCATATGGG...

CDS

Download CDS FASTA

423 bp · TkA01G374450|TK1151|CDS

ATGGGGAAACCGTTGTTCTACGAGATCCTTGAAAAACCTGCTACTAGTTGTATCATAGGATTATGCACTTTAATTTGGTTCTACATACAGAAAAAAAATATCGGGTATTCTCATGTGGGTTTGAATTATGAGACGGCTGTCGAAGGTCACCATTGGCGGATCATAACCTCTGCGATGTCGCATATAAGTGTTCTTCATCTTGTTTTCAACATGAGTGCACTTTGGAGCCTTGGCGTTGTTGAGCAATTAGGGCATATGGG...

Protein

Download Protein FASTA

140 aa · TkA01G374450|TK1151|PROTEIN

MGKPLFYEILEKPATSCIIGLCTLIWFYIQKKNIGYSHVGLNYETAVEGHHWRIITSAMSHISVLHLVFNMSALWSLGVVEQLGHMGLGAAYYLHYSLLLLQSGAYDFQFLEIESVTDPSLPGNGRMLQMSSLLDADELV

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G374450`
TK1151 ID	TkA01G374450
OH-1004 ID	LXL04_003322
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	47.000
Protein coverage (%)	TK1151 79.286 / OH-1004 69.851 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G374450

Location Chr01:93411931-93412722 (-)

Description Similar to RBL13: RHOMBOID-like protein 13

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g59520`	Probable rhomboid-type serine protease that catalyzes intramembrane proteolysis.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_003322 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006084 acetyl-CoA metabolic process Biological Process

GO:0006508 proteolysis Biological Process

GO:0007623 circadian rhythm Biological Process

GO:0010345 suberin biosynthetic process Biological Process

GO:0010597 green leaf volatile biosynthetic process Biological Process

GO:0052325 cell wall pectin biosynthetic process Biological Process

GO:0071555 cell wall organization Biological Process

GO:0090431 alkyl caffeate ester biosynthetic process Biological Process

GO:1901787 benzoyl-CoA metabolic process Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0009536 plastid Cellular Component

GO:0016020 membrane Cellular Component

KEGG gene cross-reference

ag:AAN09796

ag:AAU06226

ath:AT3G59520

ath:AT5G41040

ath:AT5G63560

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.440

Rank 1 · TkA01G374450 · TK1151

Mitochondrion0.163

Rank 2 · TkA01G374450 · TK1151

Cytoplasm0.148

Rank 3 · TkA01G374450 · TK1151

Nucleus0.126

Rank 4 · TkA01G374450 · TK1151

Golgi apparatus0.103

Rank 5 · TkA01G374450 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01694Rhomboid18-30 aa

PF01694Rhomboid49-94 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G374450	`PF01694`	Rhomboid	18	30	2.6e-08	34.9
TkA01G374450	`PF01694`	Rhomboid	49	94	2.6e-08	34.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9M1B5`	Arabidopsis thaliana	sp\|Q9M1B5\|RBL13_ARATH RHOMBOID-like protein 13	80.200%	Swiss-Prot	High

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