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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G366000
Reference: TK1151 Chr: Chr01 Coordinates: 91194086-91197545 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1862 bp · TkA01G366000|TK1151|cDNA

CGAAGTTGCCCGTTTGTCTTGGTCTTCTTTCTCACATGACAAAACTATCCATAACGCTCGTGACTATATAGAGAGAGAAAGAGAGAGAGCAGCGAGAGAAAGAGAAAGAGAGCTGAACAGCTATGGCATCTTCTAGGGTTTATACTGTACTTTTCTTCTGTGTTTTTGCAATCTTATCATCCAGTGTATCGATCTCTTCTGCTACCGAGGCGGAGAAAGAACATGTTTTGACTTTGGATCACTCAAATTTCTCAGAAGTT...

CDS

Download CDS FASTA

1521 bp · TkA01G366000|TK1151|CDS

ATGGCATCTTCTAGGGTTTATACTGTACTTTTCTTCTGTGTTTTTGCAATCTTATCATCCAGTGTATCGATCTCTTCTGCTACCGAGGCGGAGAAAGAACATGTTTTGACTTTGGATCACTCAAATTTCTCAGAAGTTGTGTCTAAACACAAATTCCTAGTCGTTGAGTTCTACGCTCCTTGGTGCGGTCACTGTAAGAGCCTGGCTCCAGAGTATGAAAAGGCAGCATCTGTGTTATCAAGCAACGAGCCTCCAGTATT...

Protein

Download Protein FASTA

506 aa · TkA01G366000|TK1151|PROTEIN

MASSRVYTVLFFCVFAILSSSVSISSATEAEKEHVLTLDHSNFSEVVSKHKFLVVEFYAPWCGHCKSLAPEYEKAASVLSSNEPPVFLAKVDANAEENKVLAQQYEIQGFPTIKILKNGGEVVQDYKGPREADGIVEYLKKQVGPASFEIKTPEDAASLIDEKKVFVVGIFPTFSGEEYENFTILADKLRSDYEFGHTTNAQLLPRGESSVTTPTIRLLKPFDELVVDFQTFEVDALEKFIEDASIPLVTLFDQSPSNQP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G366000
TK1151 IDTkA01G366000
OH-1004 IDLXL04_003381
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G366000
LocationChr01:91194086-91197545 (+)
DescriptionSimilar to Protein disulfide-isomerase
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g21750 Protein disulfide isomerase that associates with RD21A protease for trafficking from the ER through the Golgi to lytic and protein storage vacuoles of endothelial cells in developing seeds.
Arabidopsis protein disulfide isomerase-5 inhibits cysteine proteases during trafficking to vacuoles before programmed cell death of the endothelium in developing seeds.2008 · DOI: 10.1105/tpc.108.058339

Rice

Reference gene IDPossible functionPapers / DOI
Os11g0199200 Probable protein disulfide isomerase that plays an essential role in the segregation of proglutelin and prolamin polypeptides within the ER lumen of endosperm.
Protein disulfide isomerase like 1-1 participates in the maturation of proglutelin within the endoplasmic reticulum in rice endosperm.2010 · DOI: 10.1093/pcp/pcq098
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_003381 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006457 protein folding Biological Process
GO:0009793 embryo development ending in seed dormancy Biological Process
GO:0009960 endosperm development Biological Process
GO:0010043 response to zinc ion Biological Process
GO:0034975 protein folding in endoplasmic reticulum Biological Process
GO:0034976 response to endoplasmic reticulum stress Biological Process
GO:0043067 regulation of programmed cell death Biological Process
GO:0048316 seed development Biological Process
GO:0000325 plant-type vacuole Cellular Component
GO:0000326 protein storage vacuole Cellular Component
GO:0000327 lytic vacuole within protein storage vacuole Cellular Component
GO:0005634 nucleus Cellular Component
KEGG gene cross-reference
ath:AT1G21750
dosa:Os11g0199200
rcu:8281065
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.877
Rank 1 · TkA01G366000 · TK1151
Cytoplasm0.120
Rank 2 · TkA01G366000 · TK1151
Nucleus0.064
Rank 3 · TkA01G366000 · TK1151
Lysosome / Vacuole0.059
Rank 4 · TkA01G366000 · TK1151
Golgi apparatus0.057
Rank 5 · TkA01G366000 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF26981Thioredoxin-like_PDI29-67 aa
PF04756OST3_OST631-160 aa
PF26959Thioredoxin-like_N32-136 aa
PF00085Thioredoxin35-141 aa
PF07912ERp29_N35-142 aa
PF20207PedC-like37-126 aa
PF13098Thioredoxin_243-141 aa
PF00578AhpC-TSA44-140 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G366000PF26981Thioredoxin-like_PDI29670.2312.1
TkA01G366000PF04756OST3_OST6311603e-1144.0
TkA01G366000PF26959Thioredoxin-like_N321367.5e-0523.3
TkA01G366000PF00085Thioredoxin351412e-54182.6
TkA01G366000PF07912ERp29_N351420.0003921.3
TkA01G366000PF20207PedC-like371262.5e-0628.2
TkA01G366000PF13098Thioredoxin_2431411.1e-1352.2
TkA01G366000PF00578AhpC-TSA441401.5e-0628.8
TkA01G366000PF08534Redoxin481270.0007820.0
TkA01G366000PF13899Thioredoxin_7491162.5e-0731.4
TkA01G366000PF14595Thioredoxin_950800.01915.5
TkA01G366000PF13905Thioredoxin_851809.4e-0833.1
TkA01G366000PF00462Glutaredoxin571150.0004321.2
TkA01G366000PF13848Thioredoxin_6721681.5e-31110.4
TkA01G366000PF13905Thioredoxin_8911229.4e-0833.1
TkA01G366000PF07449HyaE911190.08613.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9XI01Arabidopsis thalianasp|Q9XI01|PDI11_ARATH Protein disulfide isomerase-like 1-159.200%Swiss-ProtHigh
Q53LQ0Oryza sativa subsp. japonicasp|Q53LQ0|PDI11_ORYSJ Protein disulfide isomerase-like 1-161.100%Swiss-ProtHigh

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