TkA01G355750 | RubberDandelionOmics

Gene overview

TkA01G355750

Reference: TK1151 Chr: Chr01 Coordinates: 88332277-88335982 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2202 bp · TkA01G355750|TK1151|cDNA

AAAAAAAAAAAAAAAAAAACTCCCGGTTGTGACCACTTCTCAGGCGGAGGTCGGAGACTGTGAATCCAGTGATCTCAGGGAATATCGAACTCTTTACCTCAAAGTTCAAATCCCTCGAGTGATCCCCAAGATTTGGGACGAGCCTCAACACGACTTCTGTTAGTTCTTGTATGGTTGTACCTGTACCCAAGCCTCGTGTCTCTGTATAAATTAGCATACACACAGGTGCAATTTGCTTGTGTAAAGCTTTTTTCTGAAGT...

CDS

Download CDS FASTA

1140 bp · TkA01G355750|TK1151|CDS

ATGTTATTTAGGTTTTCCAAGCTTCTAAACTTTAAGGGTTTTGCGAGACAATCTTTGTGCAACGATACAAGTTTGAAGGGGATCTCAAGGTTCCTGTGGGATATCAGCAAACGAAATATGTGTGAGGATAGCAAGGCGAAAACCCGGATTCTTTTCTGTGGGCCTCACTTTGCAGCTTCAAATAACTACACCAAAGAATACTTGCAGAACTATCCTTCTATCCAGGTTGATGATCTTCCATTTGATACTGTACCTGACCT...

Protein

Download Protein FASTA

379 aa · TkA01G355750|TK1151|PROTEIN

MLFRFSKLLNFKGFARQSLCNDTSLKGISRFLWDISKRNMCEDSKAKTRILFCGPHFAASNNYTKEYLQNYPSIQVDDLPFDTVPDLISNYDICVVKSMRLNSDLISRATKMKLIMQYGVGLEGVDIPAATTHKIKVARIPSGNTGNAASCAEMAIYFMLGLLRKQNEMQIAVRQKKLGEPVGDTLKGKTVFIMGFGNIGIELAKRLRPFGVKILATKRNWPSYVPNKSNLTEPTSKNGAHEDLVDEKGCHGDIYEFAKI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G355750`
TK1151 ID	TkA01G355750
OH-1004 ID	LXL04_003468
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.400
Protein coverage (%)	TK1151 97.625 / OH-1004 94.629 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA01G355750`
Location	Chr01:88332277-88335982 (+)
Description	Similar to serA: D-3-phosphoglycerate dehydrogenase (Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_003468` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006564 L-serine biosynthetic process Biological Process GO:0005829 cytosol Cellular Component GO:0004617 phosphoglycerate dehydrogenase activity Molecular Function GO:0008465 hydroxypyruvate reductase (NADH) activity Molecular Function GO:0016618 hydroxypyruvate reductase [NAD(P)H] activity Molecular Function GO:0030267 glyoxylate reductase (NADPH) activity Molecular Function GO:0047964 glyoxylate reductase (NADH) activity Molecular Function GO:0051287 NAD binding Molecular Function GO:0120509 hydroxypyruvate reductase (NADPH) activity Molecular Function GO:0120568 (R)-2-hydroxyglutarate (NAD+) dehydrogenase activity Molecular Function
KEGG gene cross-reference	afu:AF_0813 bsu:BSU23070 mja:MJ_1018 tma:TM1401 tmi:THEMA_07310 tmm:Tmari_1408 tmw:THMA_1430 tpe:Tpen_0823 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.873

Rank 1 · TkA01G355750 · TK1151

Cytoplasm0.134

Rank 2 · TkA01G355750 · TK1151

Nucleus0.077

Rank 3 · TkA01G355750 · TK1151

Plastid0.042

Rank 4 · TkA01G355750 · TK1151

Cell membrane0.029

Rank 5 · TkA01G355750 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF003892-Hacid_dh61-361 aa

PF028262-Hacid_dh_C157-347 aa

PF00208ELFV_dehydrog183-217 aa

PF00670AdoHcyase_NAD186-217 aa

PF07991KARI_N186-222 aa

PF01262AlaDh_PNT_C190-300 aa

PF03446NAD_binding_2191-295 aa

PF00670AdoHcyase_NAD256-296 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G355750	`PF00389`	2-Hacid_dh	61	361	1.2e-15	58.1
TkA01G355750	`PF02826`	2-Hacid_dh_C	157	347	4.1e-41	141.0
TkA01G355750	`PF00208`	ELFV_dehydrog	183	217	0.01	16.3
TkA01G355750	`PF00670`	AdoHcyase_NAD	186	217	0.002	19.0
TkA01G355750	`PF07991`	KARI_N	186	222	0.017	15.4
TkA01G355750	`PF01262`	AlaDh_PNT_C	190	300	0.015	15.4
TkA01G355750	`PF03446`	NAD_binding_2	191	295	0.21	12.4
TkA01G355750	`PF00670`	AdoHcyase_NAD	256	296	0.002	19.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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