Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1176 bp · LXL04_003468|LXL04_003468|OH1004|cDNA
ATGCTTTTTTCTGAAGTGATAATTTCGAGCATGTTATTTAGGTTTTCCAAGCTTCTAAACTTTAAGGGTTTTGCGAGACAATCTTTGTGCAACGATACAAGTTTGAAGGGGATCTCAAGGTTCCTGTGGGATATCAGCAAACGAAATATGTGTGAGGATAGCAAGGCGAAAACCCGGATTCTTTTCTGTGGGCCTCACTTTGCAGCTTCAAATAACTACACCAAAGAATACTTGCAGAACTATCCTTCTATCCAGGTTGA...
1176 bp · LXL04_003468|LXL04_003468|OH1004|CDS
ATGCTTTTTTCTGAAGTGATAATTTCGAGCATGTTATTTAGGTTTTCCAAGCTTCTAAACTTTAAGGGTTTTGCGAGACAATCTTTGTGCAACGATACAAGTTTGAAGGGGATCTCAAGGTTCCTGTGGGATATCAGCAAACGAAATATGTGTGAGGATAGCAAGGCGAAAACCCGGATTCTTTTCTGTGGGCCTCACTTTGCAGCTTCAAATAACTACACCAAAGAATACTTGCAGAACTATCCTTCTATCCAGGTTGA...
Protein
Download Protein FASTA391 aa · LXL04_003468|LXL04_003468|OH1004|PROTEIN
MLFSEVIISSMLFRFSKLLNFKGFARQSLCNDTSLKGISRFLWDISKRNMCEDSKAKTRILFCGPHFAASNNYTKEYLQNYPSIQVDDLPFDTVPDLISNYDICVVKSMRLNSDLISRATKMKLIMQYGVGLEGVDIPAATTLGIKVARIPSGNTGNAASCAEMAIYFMLGLLRKQNEMQIAVRQKKLGEPVGDTLKGKTVFIMGFGNIGIELAKRLRPFGVNILATKRNWPSYVPNKSNLTEPTSKNGAHEDLVDEKGC...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_003468 |
|---|---|
| TK1151 ID | TkA01G355750 |
| OH-1004 ID | LXL04_003468 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 98.400 |
| Protein coverage (%) | TK1151 97.625 / OH-1004 94.629Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_003468 |
|---|---|
| Location | Chr01:80214637-80217364 (-) |
| Description | Similar to serA: D-3-phosphoglycerate dehydrogenase (Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0006564 L-serine biosynthetic process Biological Process GO:0005829 cytosol Cellular Component GO:0004617 phosphoglycerate dehydrogenase activity Molecular Function GO:0008465 hydroxypyruvate reductase (NADH) activity Molecular Function GO:0016618 hydroxypyruvate reductase [NAD(P)H] activity Molecular Function GO:0030267 glyoxylate reductase (NADPH) activity Molecular Function GO:0047964 glyoxylate reductase (NADH) activity Molecular Function GO:0051287 NAD binding Molecular Function GO:0120509 hydroxypyruvate reductase (NADPH) activity Molecular Function GO:0120568 (R)-2-hydroxyglutarate (NAD+) dehydrogenase activity Molecular Function |
| KEGG gene cross-reference | afu:AF_0813 bsu:BSU23070 mja:MJ_1018 tma:TM1401 tmi:THEMA_07310 tmm:Tmari_1408 tmw:THMA_1430 tpe:Tpen_0823 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00389.372-Hacid_dh71-383 aaPF02826.262-Hacid_dh_C167-357 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_003468 | PF00389.37 | 2-Hacid_dh | 71 | 383 | 1.2e-16 | 61.3 |
| LXL04_003468 | PF02826.26 | 2-Hacid_dh_C | 167 | 357 | 1.2e-40 | 139.5 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.