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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G349810
Reference: TK1151 Chr: Chr01 Coordinates: 86858981-86859985 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1005 bp · TkA01G349810|TK1151|cDNA

ATGGCGCTTCACTACCACCAAAGATACAATCAGATGATACACGAATCACAAGCAAAATCTCTCTCACCTCATTCATCGCAAGGCAGTTTCCCAATTATAGCAGTTGCCATTATCGGAATCTTCGCCACCATCTTTCTCTTAGTCTTTTACTACATCTTCGTCATTAAATGCTGCCTCAACTGGCACAGAATCGATATCCTCCGCCGCTTCTCTCTTTCCCGTAATAGAAACCACCACCAACCCCTCGTACACCACCACCT...

CDS

Download CDS FASTA

1005 bp · TkA01G349810|TK1151|CDS

ATGGCGCTTCACTACCACCAAAGATACAATCAGATGATACACGAATCACAAGCAAAATCTCTCTCACCTCATTCATCGCAAGGCAGTTTCCCAATTATAGCAGTTGCCATTATCGGAATCTTCGCCACCATCTTTCTCTTAGTCTTTTACTACATCTTCGTCATTAAATGCTGCCTCAACTGGCACAGAATCGATATCCTCCGCCGCTTCTCTCTTTCCCGTAATAGAAACCACCACCAACCCCTCGTACACCACCACCT...

Protein

Download Protein FASTA

334 aa · TkA01G349810|TK1151|PROTEIN

MALHYHQRYNQMIHESQAKSLSPHSSQGSFPIIAVAIIGIFATIFLLVFYYIFVIKCCLNWHRIDILRRFSLSRNRNHHQPLVHHHLPSPEPKGLHESVIRAIPIFQFQKQKDSDIGIGECAVCLAEFQHDEKLRMIPNCAHVFHIDCIDVWLQNNPNCPLCRNSISISIPPHFPIPDHQQLIPPQVLKEEDYVVIELCGNGGGGGTSQTNGGEGDGSNSGEPTGVTSTPRNKLGRKLRKKYGLISSMGDECIDVSCRRK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G349810
TK1151 IDTkA01G349810
OH-1004 IDLXL04_003491
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)97.300
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G349810
LocationChr01:86858981-86859985 (-)
DescriptionSimilar to ATL16: RING-H2 finger protein ATL16
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g43420 RING-H2 finger protein ATL16. No verified direct reference in this release
At1g04360 RING-H2 finger protein ATL1. No verified direct reference in this release
At1g23980 RING-H2 finger protein ATL47. No verified direct reference in this release
At2g34990 RING-H2 finger protein ATL38. No verified direct reference in this release
At4g09100 RING-H2 finger protein ATL39. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_003491 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0016567 protein ubiquitination Biological Process
GO:0005634 nucleus Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0016020 membrane Cellular Component
GO:0004842 ubiquitin-protein transferase activity Molecular Function
GO:0008270 zinc ion binding Molecular Function
GO:0061630 ubiquitin protein ligase activity Molecular Function
KEGG gene cross-reference
ath:AT1G04360
ath:AT4G17905
ath:AT5G17600
ath:AT5G43420
dosa:Os04g0590900
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.479
Rank 1 · TkA01G349810 · TK1151
Nucleus0.293
Rank 2 · TkA01G349810 · TK1151
Cytoplasm0.248
Rank 3 · TkA01G349810 · TK1151
Endoplasmic reticulum0.101
Rank 4 · TkA01G349810 · TK1151
Lysosome / Vacuole0.063
Rank 5 · TkA01G349810 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12725DUF381042-82 aa
PF28413At5g65660_helical45-69 aa
PF12861zf-ANAPC1152-62 aa
PF13639zf-RING_2120-163 aa
PF17123zf-RING_11120-149 aa
PF13923zf-C3HC4_2120-162 aa
PF14634zf-RING_5120-163 aa
PF17120zf-RING_16120-160 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G349810PF12725DUF381042820.1112.6
TkA01G349810PF28413At5g65660_helical45691.59.2
TkA01G349810PF12861zf-ANAPC1152620.0001322.7
TkA01G349810PF13639zf-RING_21201634.8e-1349.9
TkA01G349810PF17123zf-RING_111201498e-0935.8
TkA01G349810PF13923zf-C3HC4_21201629e-0832.5
TkA01G349810PF14634zf-RING_51201638.7e-0523.1
TkA01G349810PF17120zf-RING_161201600.001319.0
TkA01G349810PF13920zf-C3HC4_31201670.005517.2
TkA01G349810PF21202SLX1_C1201620.212.7
TkA01G349810PF10367zf-Vps39_C1201502.58.5
TkA01G349810PF11793FANCL_C1201582.99.0
TkA01G349810PF14446Prok-RING_11201493.58.6
TkA01G349810PF00097zf-C3HC41211622.8e-0627.8
TkA01G349810PF13445zf-RING_UBOX1211600.0001122.8
TkA01G349810PF14447Prok-RING_41211700.07313.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LSW9Arabidopsis thalianasp|Q9LSW9|ATL16_ARATH RING-H2 finger protein ATL1651.200%Swiss-ProtHigh
P93823Arabidopsis thalianasp|P93823|ATL1_ARATH RING-H2 finger protein ATL146.600%Swiss-ProtMedium
Q8GW38Arabidopsis thalianasp|Q8GW38|ATL47_ARATH RING-H2 finger protein ATL4748.200%Swiss-ProtLow
O64762Arabidopsis thalianasp|O64762|ATL38_ARATH RING-H2 finger protein ATL3850.700%Swiss-ProtLow
Q9M0R7Arabidopsis thalianasp|Q9M0R7|ATL39_ARATH RING-H2 finger protein ATL3944.400%Swiss-ProtLow

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