Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1401 bp · TkA01G321580|TK1151|cDNA
ATGCCCGACTTTTCATGTGGTTGGAAGAACGTTTCCGGTCGATGTCAAATACGTAAACACAACATTCCATTCCGATTCCGGTTCCGGTTCCAATTCCAATTCCGGACTTGTCCCGGTTATGTTTCCGATGTGGTGAGAACAGTCGGGGAGATTCATTGGAACGAGGGCCCCGGGACTGTTCTCGCGTTTTTAACCTCTCAAATGGAAGTGGAATGGGCGTGTGAGCAGTTTAAAGTTACTTCCATTGTTGCATTACCCTT...
1401 bp · TkA01G321580|TK1151|CDS
ATGCCCGACTTTTCATGTGGTTGGAAGAACGTTTCCGGTCGATGTCAAATACGTAAACACAACATTCCATTCCGATTCCGGTTCCGGTTCCAATTCCAATTCCGGACTTGTCCCGGTTATGTTTCCGATGTGGTGAGAACAGTCGGGGAGATTCATTGGAACGAGGGCCCCGGGACTGTTCTCGCGTTTTTAACCTCTCAAATGGAAGTGGAATGGGCGTGTGAGCAGTTTAAAGTTACTTCCATTGTTGCATTACCCTT...
Protein
Download Protein FASTA466 aa · TkA01G321580|TK1151|PROTEIN
MPDFSCGWKNVSGRCQIRKHNIPFRFRFRFQFQFRTCPGYVSDVVRTVGEIHWNEGPGTVLAFLTSQMEVEWACEQFKVTSIVALPLHGKLSNEEQYRVYQNYPDKRKVIFSTNLAETSLTIPGVKYVVDSGMVKESRFEPTTGTNVLRVSRVSQSSANQRAGRAGRTEPGKCFRLYSESDFRSMALHQEPEIRQVNLGIAVLRILALGIRDVNTFDFIDAPSDSAIETAIKNLVQLGAVVIDNGVHKLTKDGRMLVQLG...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA01G321580 |
|---|---|
| TK1151 ID | TkA01G321580 |
| OH-1004 ID | LXL04_015867 |
| Relationship / confidence | Sequence Supported Annotation Or Model Conflict / Review |
| Protein identity (%) | 100.000 |
| Protein coverage (%) | TK1151 87.554 / OH-1004 23.090Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA01G321580 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr01:79923950-79925350 (-) | |||||||||
| Description | Similar to At5g10370: ATP-dependent RNA helicase DEAH12, chloroplastic | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0000398 mRNA splicing, via spliceosome Biological Process GO:0006605 protein targeting Biological Process GO:0007281 germ cell development Biological Process GO:0010172 embryonic body morphogenesis Biological Process GO:0048589 developmental growth Biological Process GO:0005634 nucleus Cellular Component GO:0005681 spliceosomal complex Cellular Component GO:0005739 mitochondrion Cellular Component GO:0005768 endosome Cellular Component GO:0009506 plasmodesma Cellular Component GO:0009507 chloroplast Cellular Component GO:0071013 catalytic step 2 spliceosome Cellular Component | |||||||||
| KEGG gene cross-reference | ath:AT3G26560 ath:AT4G01020 ath:AT5G10370 cel:CELE_EEED8.5 ddi:DDB_G0291183 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00271Helicase_C48-168 aaPF09782NDUF_B694-126 aaPF04408WHD_HA2230-260 aaPF21010HA2_C262-324 aaPF29736DDB_G0287209_beta-sheet289-311 aaPF09782NDUF_B6336-426 aaPF29736DDB_G0287209_beta-sheet341-373 aaPF07717OB_NTP_bind395-445 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA01G321580 | PF00271 | Helicase_C | 48 | 168 | 3.9e-15 | 56.8 |
| TkA01G321580 | PF09782 | NDUF_B6 | 94 | 126 | 0.067 | 14.1 |
| TkA01G321580 | PF04408 | WHD_HA2 | 230 | 260 | 0.0026 | 18.5 |
| TkA01G321580 | PF21010 | HA2_C | 262 | 324 | 1.8e-07 | 32.3 |
| TkA01G321580 | PF29736 | DDB_G0287209_beta-sheet | 289 | 311 | 0.43 | 11.2 |
| TkA01G321580 | PF09782 | NDUF_B6 | 336 | 426 | 0.067 | 14.1 |
| TkA01G321580 | PF29736 | DDB_G0287209_beta-sheet | 341 | 373 | 0.43 | 11.2 |
| TkA01G321580 | PF07717 | OB_NTP_bind | 395 | 445 | 0.00015 | 22.6 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.