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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G321500
Reference: TK1151 Chr: Chr01 Coordinates: 79881408-79889640 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3561 bp · TkA01G321500|TK1151|cDNA

ATGGCGCAATCTCTGAATCTCTCTATTTCCATTCCCCATTCCGTCAAACTCTCCCTCCCTCTCACCAACTACCCCGTCTCCCGTTTCGCCTTCTCCAATAACCCTAGCAAAATCTCTTTATGCACCAGAGCTGCCACATCAGAGTCTAATTCTTCTGTTTTGACATCCAAAAATGGATCTGACGGCATTTTATCTGCCGCGGTCTCTGATTCCAGCTCGATTGAGATTGATACAGTGACGGAGGCGGAGATGAAGGAGAA...

CDS

Download CDS FASTA

3561 bp · TkA01G321500|TK1151|CDS

ATGGCGCAATCTCTGAATCTCTCTATTTCCATTCCCCATTCCGTCAAACTCTCCCTCCCTCTCACCAACTACCCCGTCTCCCGTTTCGCCTTCTCCAATAACCCTAGCAAAATCTCTTTATGCACCAGAGCTGCCACATCAGAGTCTAATTCTTCTGTTTTGACATCCAAAAATGGATCTGACGGCATTTTATCTGCCGCGGTCTCTGATTCCAGCTCGATTGAGATTGATACAGTGACGGAGGCGGAGATGAAGGAGAA...

Protein

Download Protein FASTA

1186 aa · TkA01G321500|TK1151|PROTEIN

MAQSLNLSISIPHSVKLSLPLTNYPVSRFAFSNNPSKISLCTRAATSESNSSVLTSKNGSDGILSAAVSDSSSIEIDTVTEAEMKENGFRSTRRTKLICTIGPATCMPEQLEALAVGGMNVARINMCHGTREWHREVIQRVRKLNEDKGYAVAIMMDTEGSEIHMGDLGGGASSAKTEDGEIWTFSVRAFESVLPERTINVNYGGFAEDVEVGDDLLVDGGMVRFEVIEKIGPDVKCRCTDPGLLLPRANLTFWRNGSLV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA01G321500
TK1151 IDTkA01G321500
OH-1004 IDLXL04_003420
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)75.400
Protein coverage (%)TK1151 44.604 / OH-1004 97.089
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G321500
LocationChr01:79881408-79889640 (+)
DescriptionSimilar to Pyruvate kinase isozyme A, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g22960 Required for plastidial pyruvate kinase activity.
Function of plastidial pyruvate kinases in seeds of Arabidopsis thaliana.2007 · DOI: 10.1111/j.1365-313x.2007.03232.x
At1g32440 Required for plastidial pyruvate kinase activity. No verified direct reference in this release
At5g52920 Required for plastidial pyruvate kinase activity.
Function of plastidial pyruvate kinases in seeds of Arabidopsis thaliana.2007 · DOI: 10.1111/j.1365-313x.2007.03232.x

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_003420 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006096 glycolytic process Biological Process
GO:0006629 lipid metabolic process Biological Process
GO:0010431 seed maturation Biological Process
GO:0005737 cytoplasm Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0009570 chloroplast stroma Cellular Component
GO:0000287 magnesium ion binding Molecular Function
GO:0004743 pyruvate kinase activity Molecular Function
GO:0005524 ATP binding Molecular Function
GO:0016301 kinase activity Molecular Function
GO:0030955 potassium ion binding Molecular Function
KEGG gene cross-reference
ath:AT1G32440
ath:AT3G22960
nta:107822892
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.538
Rank 1 · TkA01G321500 · TK1151
Plastid0.316
Rank 2 · TkA01G321500 · TK1151
Cytoplasm0.128
Rank 3 · TkA01G321500 · TK1151
Mitochondrion0.062
Rank 4 · TkA01G321500 · TK1151
Cell membrane0.036
Rank 5 · TkA01G321500 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00224PK93-425 aa
PF03328HpcH_HpaI281-350 aa
PF02887PK_C471-529 aa
PF25585zf-CCCH_DUS3L472-480 aa
PF29102Su_sable_N975-998 aa
PF16131Torus997-1052 aa
PF29102Su_sable_N1024-1052 aa
PF00642zf-CCCH1026-1049 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G321500PF00224PK934252.4e-89300.4
TkA01G321500PF03328HpcH_HpaI2813500.001618.5
TkA01G321500PF02887PK_C4715293.6e-0834.2
TkA01G321500PF25585zf-CCCH_DUS3L4724800.01116.3
TkA01G321500PF29102Su_sable_N9759980.004118.2
TkA01G321500PF16131Torus99710523.2e-0938.0
TkA01G321500PF29102Su_sable_N102410520.004118.2
TkA01G321500PF00642zf-CCCH102610491.8e-1041.2
TkA01G321500PF15663zf-CCCH_3102810770.1612.9
TkA01G321500PF18345zf_CCCH_4103010481.7e-1144.5
TkA01G321500PF18044zf-CCCH_4103010491.9e-0525.0
TkA01G321500PF14608zf-CCCH_2103010480.0006920.7
TkA01G321500PF25585zf-CCCH_DUS3L103010490.01116.3
TkA01G321500PF25261zf-CCCH_PARP12103010490.3511.8
TkA01G321500PF25584zf-CCCH_RBM22103010460.7210.7
TkA01G321500PF25542zf-CCCH_12103210492.58.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LIK0Arabidopsis thalianasp|Q9LIK0|PKP1_ARATH Plastidial pyruvate kinase 1, chloroplastic79.700%Swiss-ProtLow
Q93Z53Arabidopsis thalianasp|Q93Z53|PKP3_ARATH Plastidial pyruvate kinase 3, chloroplastic41.900%Swiss-ProtLow
Q9FLW9Arabidopsis thalianasp|Q9FLW9|PKP2_ARATH Plastidial pyruvate kinase 244.700%Swiss-ProtMedium

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