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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G321100
Reference: TK1151 Chr: Chr01 Coordinates: 79777437-79784841 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3687 bp · TkA01G321100|TK1151|cDNA

AAAAAGCATCAAATACAAAAACACATGACTCTCTTTCACTATAAACATCCCTGAAATTGGCGCCCATTTTACTCCTTTCTCCCCGCCCAATTCACTCTCAACTTCTAACACGCCACCAAACACTCTCTCAACGACCATGAACAAGGGTAACGGCAGGAAACGGCCGGCGCAGCAACCACCGGTGCCGGCACAACCACCCAAGCACCATGCGGCAGAGGCGCCCATGGAAGAGGAAGACATGGACGAGGATGTATTCATTG...

CDS

Download CDS FASTA

3270 bp · TkA01G321100|TK1151|CDS

ATGAACAAGGGTAACGGCAGGAAACGGCCGGCGCAGCAACCACCGGTGCCGGCACAACCACCCAAGCACCATGCGGCAGAGGCGCCCATGGAAGAGGAAGACATGGACGAGGATGTATTCATTGAAGAGAACCTCATCGACGAAGATGAACTCATCCTCCGGGATATGGAGGACAGGGAAGCTCTCGCAGCTCGTCTTGAGAAATGGAAGCGGCCGGCATTATCTACAGGGTACCAGTCCCAGTCAGAGAACATAGTTTT...

Protein

Download Protein FASTA

1089 aa · TkA01G321100|TK1151|PROTEIN

MNKGNGRKRPAQQPPVPAQPPKHHAAEAPMEEEDMDEDVFIEENLIDEDELILRDMEDREALAARLEKWKRPALSTGYQSQSENIVFQQLEIDYVIGESHKGLIPNSSGPAAIIRIFGVTKEGNSVCCNVHGFEPYFYISCPPGMGPDDISRFHQILEGRMREVNRNNNVPKFIIRIELVQKKSIMYYQQHKSQPFLKIVVALPTMVASCRGILDKGIQIDGIGMKSFMTYESNVLFVLRYMIDCNIVGGNWIEVPAHKY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA01G321100
TK1151 IDTkA01G321100
OH-1004 IDLXL04_003385
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)99.800
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G321100
LocationChr01:79777437-79784841 (+)
DescriptionSimilar to POLD1: DNA polymerase delta catalytic subunit
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g63960 This polymerase possesses two enzymatic activities: DNA synthesis (polymerase) and an exonucleolytic activity that degrades single-stranded DNA in the 3'- to 5'-direction. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os11g0186400 This polymerase possesses two enzymatic activities: DNA synthesis (polymerase) and an exonucleolytic activity that degrades single-stranded DNA in the 3'- to 5'-direction. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_003385 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000731 DNA synthesis involved in DNA repair Biological Process
GO:0006260 DNA replication Biological Process
GO:0006261 DNA-templated DNA replication Biological Process
GO:0006287 base-excision repair, gap-filling Biological Process
GO:0006297 nucleotide-excision repair, DNA gap filling Biological Process
GO:0034644 cellular response to UV Biological Process
GO:0045004 DNA replication proofreading Biological Process
GO:0055089 fatty acid homeostasis Biological Process
GO:0070987 error-free translesion synthesis Biological Process
GO:0071897 DNA biosynthetic process Biological Process
GO:0000109 nucleotide-excision repair complex Cellular Component
GO:0000781 chromosome, telomeric region Cellular Component
KEGG gene cross-reference
ath:AT5G63960
dosa:Os11g0186400
gmx:548092
mmu:18971
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.621
Rank 1 · TkA01G321100 · TK1151
Cytoplasm0.367
Rank 2 · TkA01G321100 · TK1151
Mitochondrion0.096
Rank 3 · TkA01G321100 · TK1151
Cell membrane0.040
Rank 4 · TkA01G321100 · TK1151
Endoplasmic reticulum0.032
Rank 5 · TkA01G321100 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF24065REV3_N113-131 aa
PF24055POL3_N132-207 aa
PF00136DNA_pol_B150-200 aa
PF03104DNA_pol_B_exo1230-463 aa
PF03175DNA_pol_B_2479-608 aa
PF00136DNA_pol_B527-960 aa
PF20286divDNApol628-717 aa
PF03104DNA_pol_B_exo1679-717 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G321100PF24065REV3_N1131310.002119.0
TkA01G321100PF24055POL3_N1322075.8e-0730.7
TkA01G321100PF00136DNA_pol_B1502002.9e-161538.0
TkA01G321100PF03104DNA_pol_B_exo12304632.8e-70237.2
TkA01G321100PF03175DNA_pol_B_24796089.2e-0522.2
TkA01G321100PF00136DNA_pol_B5279602.9e-161538.0
TkA01G321100PF20286divDNApol6287170.2310.3
TkA01G321100PF03104DNA_pol_B_exo16797172.8e-70237.2
TkA01G321100PF03175DNA_pol_B_27808109.2e-0522.2
TkA01G321100PF24055POL3_N7867935.8e-0730.7
TkA01G321100PF24065REV3_N9469570.002119.0
TkA01G321100PF18912DZR_299610477.67.2
TkA01G321100PF14260zf-C4pol99710683.8e-1969.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LVN7Arabidopsis thalianasp|Q9LVN7|DPOD1_ARATH DNA polymerase delta catalytic subunit82.600%Swiss-ProtHigh
Q9LRE6Oryza sativa subsp. japonicasp|Q9LRE6|DPOD1_ORYSJ DNA polymerase delta catalytic subunit85.700%Swiss-ProtHigh

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