TkA01G316710 | RubberDandelionOmics

Gene overview

TkA01G316710

Reference: TK1151 Chr: Chr01 Coordinates: 78609992-78613728 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1736 bp · TkA01G316710|TK1151|cDNA

TCTGAAGGATAAATAAACCGATTTTTGTAATTAACAACAACAAATCTTACGAGGGAGACGCTGCCGAAAGTTTTAGAACAAGAGCTAGCAACGTCGGCAATGGTCGGCTACAAATCCATATATGGCGGCGATAAAATGAGGACCTTTAGCTGAATCATTACATGTTTAAGGAAACAGAAACCAATCTCCACGCTGTCTTCTTCTCTCTCGCGTTCATGGCCGCAACAGCATTCTCTCTTTCTTCCTCCATTGACCTCTAC...

CDS

Download CDS FASTA

999 bp · TkA01G316710|TK1151|CDS

ATGTTTAAGGAAACAGAAACCAATCTCCACGCTGTCTTCTTCTCTCTCGCGTTCATGGCCGCAACAGCATTCTCTCTTTCTTCCTCCATTGACCTCTACCACCAACACCACCTCCAACCCCACCGCAATCTCCGCCACCAGCCACCGTATTCCAAAACCCACATCTTCCCCCACCCTTCCTCCAAGATCTTCCCCAAATCCACAAATCTCTTTCTCACCTGCTCCTCTCACTCCTCATCATCTCCAACTCTCCAAGAAAA...

Protein

Download Protein FASTA

332 aa · TkA01G316710|TK1151|PROTEIN

MFKETETNLHAVFFSLAFMAATAFSLSSSIDLYHQHHLQPHRNLRHQPPYSKTHIFPHPSSKIFPKSTNLFLTCSSHSSSSPTLQENPLPTGKFLSNPDLQKLKFLENFKFFHKLPSGSMLLIRVMQEQEMDMTVDLLAESFAESMMLPKTYVKLLGFLVKQYLVERRGLMPHAATLIAFHRRDTDEEGGEVEDIQLAGTVEVSFNKLGANVSPPSPTPPKDAPYICNMTVKKSLRRQGIGWHLLKASEELISEMSSVRE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G316710`
TK1151 ID	TkA01G316710
OH-1004 ID	LXL04_020941
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	97.800
Protein coverage (%)	TK1151 94.578 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G316710

Location Chr01:78609992-78613728 (+)

Description Protein of unknown function

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g24040`	Protein acetyltransferase with dual specificity triggering both N-alpha-acetylation (NTA), with a large spectrum of modified N-termini, including methionine, alanine, serine and to a lower extent threonine and valine as substrates, and epsilon-lysine acetylation (KA).	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_020941 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006474 N-terminal protein amino acid acetylation Biological Process

GO:0018394 peptidyl-lysine acetylation Biological Process

GO:0009507 chloroplast Cellular Component

GO:0004596 protein-N-terminal amino-acid acetyltransferase activity Molecular Function

GO:0008080 N-acetyltransferase activity Molecular Function

GO:0061733 protein-lysine-acetyltransferase activity Molecular Function

KEGG gene cross-reference

ath:AT1G24040

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.969

Rank 1 · TkA01G316710 · TK1151

Nucleus0.034

Rank 2 · TkA01G316710 · TK1151

Mitochondrion0.030

Rank 3 · TkA01G316710 · TK1151

Cytoplasm0.027

Rank 4 · TkA01G316710 · TK1151

Cell membrane0.018

Rank 5 · TkA01G316710 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF09949APP1_cat90-128 aa

PF00583Acetyltransf_1197-281 aa

PF13673Acetyltransf_10222-264 aa

PF08445FR47224-283 aa

PF13508Acetyltransf_7225-282 aa

PF09949APP1_cat248-326 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G316710	`PF09949`	APP1_cat	90	128	0.15	12.7
TkA01G316710	`PF00583`	Acetyltransf_1	197	281	6.7e-06	27.1
TkA01G316710	`PF13673`	Acetyltransf_10	222	264	0.0016	19.2
TkA01G316710	`PF08445`	FR47	224	283	0.016	15.9
TkA01G316710	`PF13508`	Acetyltransf_7	225	282	0.0003	21.8
TkA01G316710	`PF09949`	APP1_cat	248	326	0.15	12.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9LR91`	Arabidopsis thaliana	sp\|Q9LR91\|GNAT5_ARATH GCN5-related N-acetyltransferase 5, chloroplastic	63.600%	Swiss-Prot	Medium

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