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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G248010
Reference: TK1151 Chr: Chr01 Coordinates: 62594235-62594567 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

333 bp · TkA01G248010|TK1151|cDNA

AAGCTTATACTGACCTTTAAGCGTGGTCCCACAGGTGGTCCCACAGCCTCAACTGCCTCATCACCACAGTCTGTTCGTCCTCGGAAGAAATCAAGGTCAGGATCAGTTTCCAATTCGGAGAATTGGTATCTGTCCTTGTGTGCGGCAATAGCCGAGTTGAGGGAACAAAAGTATTTAACCTTGCCTGAAGTTACCAGGATGGAACATCTTCCAAATGGTCTATTTCAGAATGAGGCCACGGCTCGGGTCTTTTTGTATGA...

CDS

Download CDS FASTA

333 bp · TkA01G248010|TK1151|CDS

AAGCTTATACTGACCTTTAAGCGTGGTCCCACAGGTGGTCCCACAGCCTCAACTGCCTCATCACCACAGTCTGTTCGTCCTCGGAAGAAATCAAGGTCAGGATCAGTTTCCAATTCGGAGAATTGGTATCTGTCCTTGTGTGCGGCAATAGCCGAGTTGAGGGAACAAAAGTATTTAACCTTGCCTGAAGTTACCAGGATGGAACATCTTCCAAATGGTCTATTTCAGAATGAGGCCACGGCTCGGGTCTTTTTGTATGA...

Protein

Download Protein FASTA

110 aa · TkA01G248010|TK1151|PROTEIN

KLILTFKRGPTGGPTASTASSPQSVRPRKKSRSGSVSNSENWYLSLCAAIAELREQKYLTLPEVTRMEHLPNGLFQNEATARVFLYEQKMSERVAMIKDIFDAADADKES

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA01G248010
TK1151 IDTkA01G248010
OH-1004 IDLXL04_020296
Relationship / confidenceSequence Supported Annotation Or Model Conflict / Review
Protein identity (%)96.200
Protein coverage (%)TK1151 95.455 / OH-1004 7.345
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G248010
LocationChr01:62594235-62594567 (+)
DescriptionSimilar to ILP1: Transcriptional repressor ILP1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_020296 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000245 spliceosomal complex assembly Biological Process
GO:0000398 mRNA splicing, via spliceosome Biological Process
GO:0006351 DNA-templated transcription Biological Process
GO:0014842 regulation of skeletal muscle satellite cell proliferation Biological Process
GO:0042023 DNA endoreduplication Biological Process
GO:0045892 negative regulation of DNA-templated transcription Biological Process
GO:0045944 positive regulation of transcription by RNA polymerase II Biological Process
GO:2000288 positive regulation of myoblast proliferation Biological Process
GO:0005634 nucleus Cellular Component
GO:0005654 nucleoplasm Cellular Component
GO:0005730 nucleolus Cellular Component
GO:0005829 cytosol Cellular Component
KEGG gene cross-reference
ath:AT5G08550
hsa:6936
hsa:94104
mmu:330361
mmu:67367
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.965
Rank 1 · TkA01G248010 · TK1151
Cytoplasm0.148
Rank 2 · TkA01G248010 · TK1151
Mitochondrion0.015
Rank 3 · TkA01G248010 · TK1151
Cell membrane0.012
Rank 4 · TkA01G248010 · TK1151
Extracellular0.007
Rank 5 · TkA01G248010 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

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