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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G245290
Reference: TK1151 Chr: Chr01 Coordinates: 61935616-61939422 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2586 bp · TkA01G245290|TK1151|cDNA

CTGAAATCGACTACTGAGGGAGCACGAAGGAGCAGTGGTACTAGCGTTCCCCACTTTCTTCCCCATACCAAGTTACCAACCACATGTTACTATCAATCAAATTCAAAAACTAATTATCTCAGATCTCCTATCACTTCGTCTTCTTCGTTTTCAGCATTCGTGTTCCTTGTCAAAGGCTACTCATTGCTTTTGCCATCTTAATGTCAAGGACGCCAGTCGAACATATGAGGGACCTGGCACGTTACGTTCGTAAATAGTTT...

CDS

Download CDS FASTA

372 bp · TkA01G245290|TK1151|CDS

ATGTTGTGTGCTTGTTCGGGAGAGCAATTTAAGGTAGAAGAGCCGATTTCACGTTCACCAGAATCATTGGCTACAAGGGATTTCTCAGCTAGTGGTATTTCCTCTCGAACTGGTACCGGAGATTGGGATTCAAAATTCGAAGATGCTCAAGTGGATGAAGCTGAATCCACTCTTAAAGAAGCCCTTTCCCTGAACTATGAGGAAGCCAGAGCATTGTTGGGTAGACTTGAGTACCAGAGGGGCAATTTCGATGCTGCTCT...

Protein

Download Protein FASTA

123 aa · TkA01G245290|TK1151|PROTEIN

MLCACSGEQFKVEEPISRSPESLATRDFSASGISSRTGTGDWDSKFEDAQVDEAESTLKEALSLNYEEARALLGRLEYQRGNFDAALQVFYGIDIRSLSPRMIKAISDRTLQQNSKPKGKIVW

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA01G245290
TK1151 IDTkA01G245290
OH-1004 IDLXL04_007922
Relationship / confidenceSequence Supported Annotation Or Model Conflict / Review
Protein identity (%)99.100
Protein coverage (%)TK1151 90.244 / OH-1004 15.247
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G245290
LocationChr01:61935616-61939422 (-)
DescriptionSimilar to NPGR1: Protein NPGR1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g27460 Protein NPGR1. No verified direct reference in this release
At4g28600 Protein NPGR2. No verified direct reference in this release
At2g43040 Calmodulin-binding protein essential for pollen germination, but not necessary for microsporogenesis or gametogenesis.
A calmodulin-binding protein from Arabidopsis has an essential role in pollen germination.2003 · DOI: 10.1073/pnas.1734110100

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_007922 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009555 pollen development Biological Process
GO:0009846 pollen germination Biological Process
GO:0046854 phosphatidylinositol phosphate biosynthetic process Biological Process
GO:0072659 protein localization to plasma membrane Biological Process
GO:0005634 nucleus Cellular Component
GO:0005829 cytosol Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0009898 cytoplasmic side of plasma membrane Cellular Component
GO:0098857 membrane microdomain Cellular Component
GO:0005516 calmodulin binding Molecular Function
KEGG gene cross-reference
ath:AT1G27460
ath:AT2G43040
ath:AT4G28600
hsa:145567
mmu:104718
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.762
Rank 1 · TkA01G245290 · TK1151
Cytoplasm0.080
Rank 2 · TkA01G245290 · TK1151
Extracellular0.075
Rank 3 · TkA01G245290 · TK1151
Mitochondrion0.070
Rank 4 · TkA01G245290 · TK1151
Nucleus0.050
Rank 5 · TkA01G245290 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13176TPR_739-43 aa
PF13432TPR_1647-93 aa
PF14559TPR_1947-89 aa
PF13428TPR_1449-73 aa
PF07719TPR_250-65 aa
PF13181TPR_850-65 aa
PF13374TPR_1050-64 aa
PF13176TPR_750-68 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G245290PF13176TPR_739430.411.6
TkA01G245290PF13432TPR_1647935.8e-0627.4
TkA01G245290PF14559TPR_1947899.9e-0523.3
TkA01G245290PF13428TPR_1449730.01316.9
TkA01G245290PF07719TPR_250650.01815.8
TkA01G245290PF13181TPR_850650.1513.0
TkA01G245290PF13374TPR_1050640.3211.8
TkA01G245290PF13176TPR_750680.411.6
TkA01G245290PF07721TPR_451580.02815.7
TkA01G245290PF13414TPR_1151710.2311.9
TkA01G245290PF00515TPR_152650.1312.8
TkA01G245290PF13424TPR_1263900.113.5
TkA01G245290PF13374TPR_1065730.3211.8
TkA01G245290PF13428TPR_1468900.01316.9
TkA01G245290PF13181TPR_868900.1513.0
TkA01G245290PF07719TPR_269900.01815.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9CB03Arabidopsis thalianasp|Q9CB03|NPGR1_ARATH Protein NPGR177.900%Swiss-ProtHigh
Q66GN3Arabidopsis thalianasp|Q66GN3|NPGR2_ARATH Protein NPGR244.500%Swiss-ProtMedium
Q8GZN1Arabidopsis thalianasp|Q8GZN1|NPG1_ARATH Protein NPG148.300%Swiss-ProtMedium

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