TkA01G235310 | RubberDandelionOmics

Gene overview

TkA01G235310

Reference: TK1151 Chr: Chr01 Coordinates: 59620187-59622913 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2178 bp · TkA01G235310|TK1151|cDNA

CTAAGCACTTTCAGACACCGAAACGGTTGTTAAATAAAGAAAAATAGTAGTAAAGTTTGTTGAACAGCACAACAAATTCTAAAACCCTTTCCTTTTCAATTTGGTAAACAAGAATTAGTCATCCCACCTTAAAAAGAAAGGTGGTGGTGGTGGAGTCCAACAACCAGCAAAATCTTTCTCCTCCTCAAGAGATCCAAACACAGTTCCAACTTTTTGAAGAAAATCCTCCCTGTCTGGGACAAATGGCATGAAGAAAGAGA...

CDS

Download CDS FASTA

924 bp · TkA01G235310|TK1151|CDS

ATGGCAAGGAGGAAGCTTAAGCTTAGAGGTTCGACAGGTCTTGTGAGGCTTCAGGGCGTGGTGAGAGGTCAACATGTGAAGCGACAGACGGTCAATGCCATGAAGCAGATGCAGCTCCTCGTTAGGCTCCAAACTCAAATTCAGTCGCAAAGAATGCAAACAATAGAGAATCAAGCACTCAAACGCCAACCACAACCACAAGTTGCCAAGAACCAATTGGATATGGGGGATGAAGATTGGGATGATAGCGTGATTACAAA...

Protein

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307 aa · TkA01G235310|TK1151|PROTEIN

MARRKLKLRGSTGLVRLQGVVRGQHVKRQTVNAMKQMQLLVRLQTQIQSQRMQTIENQALKRQPQPQVAKNQLDMGDEDWDDSVITKEEREARLRRKMEALNKRERAMAYAHSRQLLKATPKSAQNTLMGYPWWWNWLDRELPSNTQIGKNHEFTATQSPQSSRQSSRQKQAIRPSSSTSTSTTRQQKMTPTSTTPPSRMMKFSKARGDSASASASPYPMKDDDSLMSCPPFSGPNYMSPTLSAKAKARPTSSNPRDRMP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G235310`
TK1151 ID	TkA01G235310
OH-1004 ID	LXL04_003918
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	94.100
Protein coverage (%)	TK1151 100.000 / OH-1004 67.937 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G235310

Location Chr01:59620187-59622913 (-)

Description Similar to IQD14: Protein IQ-DOMAIN 14

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g59690`	May be involved in cooperative interactions with calmodulins or calmodulin-like proteins (By similarity).	No verified direct reference in this release
`At2g43680`	May be involved in cooperative interactions with calmodulins or calmodulin-like proteins (By similarity).	No verified direct reference in this release
`At5g13460`	May be involved in cooperative interactions with calmodulins or calmodulin-like proteins (By similarity).	No verified direct reference in this release
`At5g35670`	May be involved in cooperative interactions with calmodulins or calmodulin-like proteins (By similarity).	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_003918 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009834 plant-type secondary cell wall biogenesis Biological Process

GO:0010089 xylem development Biological Process

GO:0051592 response to calcium ion Biological Process

GO:2000652 regulation of secondary cell wall biogenesis Biological Process

GO:0005634 nucleus Cellular Component

GO:0005730 nucleolus Cellular Component

GO:0005856 cytoskeleton Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0055028 cortical microtubule Cellular Component

GO:0005516 calmodulin binding Molecular Function

KEGG gene cross-reference

ath:AT2G43680

ath:AT3G52290

ath:AT3G59690

ath:AT5G03040

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.632

Rank 1 · TkA01G235310 · TK1151

Nucleus0.362

Rank 2 · TkA01G235310 · TK1151

Cell membrane0.100

Rank 3 · TkA01G235310 · TK1151

Endoplasmic reticulum0.036

Rank 4 · TkA01G235310 · TK1151

Mitochondrion0.033

Rank 5 · TkA01G235310 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12722Hid135-193 aa

PF13178DUF4005208-284 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G235310	`PF12722`	Hid1	35	193	9.2	5.0
TkA01G235310	`PF13178`	DUF4005	208	284	0.013	16.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9M199`	Arabidopsis thaliana	sp\|Q9M199\|IQD13_ARATH Protein IQ-DOMAIN 13	43.100%	Swiss-Prot	Medium
`Q8LPG9`	Arabidopsis thaliana	sp\|Q8LPG9\|IQD14_ARATH Protein IQ-DOMAIN 14	42.200%	Swiss-Prot	Medium
`Q9LYR0`	Arabidopsis thaliana	sp\|Q9LYR0\|IQD11_ARATH Protein IQ-DOMAIN 11	31.000%	Swiss-Prot	Low
`Q8L8M9`	Arabidopsis thaliana	sp\|Q8L8M9\|IQD33_ARATH Protein IQ-DOMAIN 33	35.100%	Swiss-Prot	Low

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