LXL04_003918 | RubberDandelionOmics

Gene overview

LXL04_003918

Reference: OH-1004 Chr: Chr01 Coordinates: 115208541-115210350 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1341 bp · LXL04_003918|LXL04_003918|OH1004|cDNA

ATGGGAAAGAAAGGGGGTTGGTTTTCTGCTATCAAGAAGTTTTGTACATCAAACTCCAAACAGAAGCCAGTGAATGAAGCTGAGAAGAAAAGATTGAAGGAGAAGAAGGGGTTAAAACATGGAATTGGGAACAGATCATTCATTCCCCTATTCAGAGAGCCAAGCAGTATCGAGAAAATATTGGGGGAAGTTGACCAACAAAATATATACATCCCTCAATCTCATCATCATCCAATTCCAAAGCAACCAGAAGAAGCCCA...

CDS

Download CDS FASTA

1341 bp · LXL04_003918|LXL04_003918|OH1004|CDS

ATGGGAAAGAAAGGGGGTTGGTTTTCTGCTATCAAGAAGTTTTGTACATCAAACTCCAAACAGAAGCCAGTGAATGAAGCTGAGAAGAAAAGATTGAAGGAGAAGAAGGGGTTAAAACATGGAATTGGGAACAGATCATTCATTCCCCTATTCAGAGAGCCAAGCAGTATCGAGAAAATATTGGGGGAAGTTGACCAACAAAATATATACATCCCTCAATCTCATCATCATCCAATTCCAAAGCAACCAGAAGAAGCCCA...

Protein

Download Protein FASTA

446 aa · LXL04_003918|LXL04_003918|OH1004|PROTEIN

MGKKGGWFSAIKKFCTSNSKQKPVNEAEKKRLKEKKGLKHGIGNRSFIPLFREPSSIEKILGEVDQQNIYIPQSHHHPIPKQPEEAQPSGRPQSPRPPSPKAAPAPSPRVVVDEETKIQSKPEPSLQQPHLSATKIQAAYRGYMARRKLKLRGSTGLVRLQGVVRGQHVKRQTVNAMKQMQLLVRLQTQIQSQRMQTIENQALKRQPQPQVAKNQLDMGDEDWDDSVITKEEREARLRRKMEALNKRERAMAYAHSRQLL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_003918`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_003918

Location Chr01:115208541-115210350 (-)

Description Similar to IQD14: Protein IQ-DOMAIN 14

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g59690`	May be involved in cooperative interactions with calmodulins or calmodulin-like proteins (By similarity).	No verified direct reference in this release
`At2g43680`	May be involved in cooperative interactions with calmodulins or calmodulin-like proteins (By similarity).	No verified direct reference in this release
`At3g52290`	May be involved in cooperative interactions with calmodulins or calmodulin-like proteins (By similarity).	No verified direct reference in this release
`At5g03040`	May be involved in cooperative interactions with calmodulins or calmodulin-like proteins (By similarity).	No verified direct reference in this release
`At5g13460`	May be involved in cooperative interactions with calmodulins or calmodulin-like proteins (By similarity).	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_003918 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009834 plant-type secondary cell wall biogenesis Biological Process

GO:0010089 xylem development Biological Process

GO:0051592 response to calcium ion Biological Process

GO:2000652 regulation of secondary cell wall biogenesis Biological Process

GO:0005634 nucleus Cellular Component

GO:0005730 nucleolus Cellular Component

GO:0005856 cytoskeleton Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0055028 cortical microtubule Cellular Component

GO:0005516 calmodulin binding Molecular Function

KEGG gene cross-reference

ath:AT2G43680

ath:AT3G52290

ath:AT3G59690

ath:AT5G03040

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.457

Rank 1 · LXL04_003918 · OH-1004

Cell membrane0.353

Rank 2 · LXL04_003918 · OH-1004

Nucleus0.347

Rank 3 · LXL04_003918 · OH-1004

Endoplasmic reticulum0.048

Rank 4 · LXL04_003918 · OH-1004

Plastid0.032

Rank 5 · LXL04_003918 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00612.34IQ132-150 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_003918	`PF00612.34`	IQ	132	150	5.7e-06	26.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9M199`	Arabidopsis thaliana	Protein IQ-DOMAIN 13	40.977%	Swiss-Prot	moderate database homology
`Q8LPG9`	Arabidopsis thaliana	Protein IQ-DOMAIN 14	45.297%	Swiss-Prot	moderate database homology
`Q9FT53`	Arabidopsis thaliana	Protein IQ-DOMAIN 3	34.049%	Swiss-Prot	moderate database homology
`Q93ZH7`	Arabidopsis thaliana	Protein IQ-DOMAIN 2	30.303%	Swiss-Prot	moderate database homology
`Q9LYR0`	Arabidopsis thaliana	Protein IQ-DOMAIN 11	28.832%	Swiss-Prot	weak database homology

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