TkA01G210360 | RubberDandelionOmics

Gene overview

TkA01G210360

Reference: TK1151 Chr: Chr01 Coordinates: 53514752-53516207 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1068 bp · TkA01G210360|TK1151|cDNA

ATGGGGAAGGTATCGTATATGAAGCTTAAAGGTAGTCAAAACCTAAGGCAACGCCTACTTCTGTCAACTCTCACTTCAACACCGATTCTAATCGAGGATATCCATGCCGATGACTCCACCGGCCCTAGACTCCTTGATCACGAGTTCTCGCTGCTCTGCCTTCTCGAAACGATTTCCGATGACTGCCATTTCGAAATTTACGAATCTGGGACGAAGTTGAAGTACAAGCCTGGGATAGTGATGGGTGGGGGATATCTGGA...

CDS

Download CDS FASTA

1068 bp · TkA01G210360|TK1151|CDS

ATGGGGAAGGTATCGTATATGAAGCTTAAAGGTAGTCAAAACCTAAGGCAACGCCTACTTCTGTCAACTCTCACTTCAACACCGATTCTAATCGAGGATATCCATGCCGATGACTCCACCGGCCCTAGACTCCTTGATCACGAGTTCTCGCTGCTCTGCCTTCTCGAAACGATTTCCGATGACTGCCATTTCGAAATTTACGAATCTGGGACGAAGTTGAAGTACAAGCCTGGGATAGTGATGGGTGGGGGATATCTGGA...

Protein

Download Protein FASTA

355 aa · TkA01G210360|TK1151|PROTEIN

MGKVSYMKLKGSQNLRQRLLLSTLTSTPILIEDIHADDSTGPRLLDHEFSLLCLLETISDDCHFEIYESGTKLKYKPGIVMGGGYLEYDCGLSRSIGYFLEPLIVLGLFGKKPLSIKLKGITNDPKDPSVDTFRSTTLPLLKRFGVPSEGLELKIESCGVAPLGGGEVTLSVPIVHSSLKPVTWTDEGMVKRIRGISFSTRVSVQFENTMIHAAKGIFNRLLPDVHIFTDHKAGAQAGNSPGYGISLVAETISGCYISVD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G210360`
TK1151 ID	TkA01G210360
OH-1004 ID	LXL04_035653
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	91.300
Protein coverage (%)	TK1151 87.606 / OH-1004 40.417 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G210360

Location Chr01:53514752-53516207 (-)

Description Similar to At5g22100: Probable RNA 3'-terminal phosphate cyclase-like protein

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g22100`	Does not have cyclase activity.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_035653 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000447 endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) Biological Process

GO:0000479 endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) Biological Process

GO:0000480 endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) Biological Process

GO:0006364 rRNA processing Biological Process

GO:0030490 maturation of SSU-rRNA Biological Process

GO:0042274 ribosomal small subunit biogenesis Biological Process

GO:0005654 nucleoplasm Cellular Component

GO:0005730 nucleolus Cellular Component

GO:0032040 small-subunit processome Cellular Component

GO:0045335 phagocytic vesicle Cellular Component

GO:0004521 RNA endonuclease activity Molecular Function

KEGG gene cross-reference

ath:AT5G22100

ddi:DDB_G0282803

hsa:10171

mmu:59028

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.511

Rank 1 · TkA01G210360 · TK1151

Cytoplasm0.335

Rank 2 · TkA01G210360 · TK1151

Mitochondrion0.087

Rank 3 · TkA01G210360 · TK1151

Peroxisome0.043

Rank 4 · TkA01G210360 · TK1151

Cell membrane0.033

Rank 5 · TkA01G210360 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01137RTC8-313 aa

PF05189RTC_insert185-301 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G210360	`PF01137`	RTC	8	313	3.1e-42	145.0
TkA01G210360	`PF05189`	RTC_insert	185	301	1.9e-26	93.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9C578`	Arabidopsis thaliana	sp\|Q9C578\|RCL1_ARATH Probable RNA 3'-terminal phosphate cyclase-like protein	63.300%	Swiss-Prot	High

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