LXL04_035653 | RubberDandelionOmics

Gene overview

LXL04_035653

Reference: OH-1004 Chr: Chr08 Coordinates: 26401389-26410086 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2304 bp · LXL04_035653|LXL04_035653|OH1004|cDNA

ATGGGGAAGGTATCGTATATGAAGCTTAAAGGTAGTCAAAACCTAAGACAACGGCTACTTCTGTCAACCCTCACTTCAACACCGATTCTAATCGAGGATATCCATGCCGACTCCACCTGGCCTGGACTCCTTGAGCACGAGATCAAGCTGCTCCGCCTTCTCGAAAAGATTTCCGATGACTGCCATGTGGAAATCAACGAATCTGGGACGAAGTTGAAGTACAAGCCTGGGATAGTGATGGGTGGGGGATATCTGGAGCA...

CDS

Download CDS FASTA

2304 bp · LXL04_035653|LXL04_035653|OH1004|CDS

ATGGGGAAGGTATCGTATATGAAGCTTAAAGGTAGTCAAAACCTAAGACAACGGCTACTTCTGTCAACCCTCACTTCAACACCGATTCTAATCGAGGATATCCATGCCGACTCCACCTGGCCTGGACTCCTTGAGCACGAGATCAAGCTGCTCCGCCTTCTCGAAAAGATTTCCGATGACTGCCATGTGGAAATCAACGAATCTGGGACGAAGTTGAAGTACAAGCCTGGGATAGTGATGGGTGGGGGATATCTGGAGCA...

Protein

Download Protein FASTA

767 aa · LXL04_035653|LXL04_035653|OH1004|PROTEIN

MGKVSYMKLKGSQNLRQRLLLSTLTSTPILIEDIHADSTWPGLLEHEIKLLRLLEKISDDCHVEINESGTKLKYKPGIVMGGGYLEHDCGLSRSIGYFLEPLIVLGLFGKKPLSINLKGITNDPKDPSVDTFRSTTLPLLKRFGVPSEGLELKIVSRGVAPLGGGEVTLSVPIVHSSLKPVTWTDEGMVKRIRGISFSTRVSVQFENTMIHAARGIFNRLLPDVHIFTDHKAGSQAGKSPGYGISLVAETTSGCYISVDT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_035653`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_035653

Location Chr08:26401389-26410086 (-)

Description Similar to At5g22100: Probable RNA 3'-terminal phosphate cyclase-like protein

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g22100`	Does not have cyclase activity.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_035653 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000447 endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) Biological Process

GO:0000479 endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) Biological Process

GO:0000480 endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) Biological Process

GO:0006364 rRNA processing Biological Process

GO:0030490 maturation of SSU-rRNA Biological Process

GO:0042274 ribosomal small subunit biogenesis Biological Process

GO:0005654 nucleoplasm Cellular Component

GO:0005730 nucleolus Cellular Component

GO:0032040 small-subunit processome Cellular Component

GO:0045335 phagocytic vesicle Cellular Component

GO:0004521 RNA endonuclease activity Molecular Function

KEGG gene cross-reference

ath:AT5G22100

ddi:DDB_G0282803

hsa:10171

mmu:59028

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.453

Rank 1 · LXL04_035653 · OH-1004

Cytoplasm0.221

Rank 2 · LXL04_035653 · OH-1004

Peroxisome0.207

Rank 3 · LXL04_035653 · OH-1004

Nucleus0.142

Rank 4 · LXL04_035653 · OH-1004

Plastid0.046

Rank 5 · LXL04_035653 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01137.27RTC8-353 aa

PF05189.19RTC_insert184-300 aa

PF01137.27RTC418-466 aa

PF15011.13CA109-like613-653 aa

PF15011.13CA109-like654-766 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_035653	`PF01137.27`	RTC	8	353	1.7e-66	224.3
LXL04_035653	`PF05189.19`	RTC_insert	184	300	2.6e-28	99.1
LXL04_035653	`PF01137.27`	RTC	418	466	1.7e-66	224.3
LXL04_035653	`PF15011.13`	CA109-like	613	653	7.8e-37	127.5
LXL04_035653	`PF15011.13`	CA109-like	654	766	7.8e-37	127.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9C578`	Arabidopsis thaliana	Probable RNA 3'-terminal phosphate cyclase-like protein	67.945%	Swiss-Prot	weak database homology

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