TkA01G194940 | RubberDandelionOmics

Gene overview

TkA01G194940

Reference: TK1151 Chr: Chr01 Coordinates: 49834279-49842010 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3040 bp · TkA01G194940|TK1151|cDNA

GTGGGACCCATTGACTTTGGTCATTAACCGATTTTAGTTCTCTTTTATTGATGCGAAACACTTGCTGCACTAAAGTTGTTCAGGTCTATTCTGGCTTGTTCCACTCACCATACGCTAAGCCCTAATCACCCTTTCAGAAACTTCCCACGATCTCTCGACGCCCAACCCCCCACCCACCCACCATCTCGACCAGATTTGTTCTTCAGCCTCTCAATTCTACGAATAATGATTCAAAAGGATCAATAAGCGACATCTACTTC...

CDS

Download CDS FASTA

1929 bp · TkA01G194940|TK1151|CDS

ATGACAATGGTTGCATTCAAGCTTCAAGTCAACGGAACCGATGAATATTACGTAGATAACATCGATGGATTCAACTTGCCGGTATCCGTGGATGCGATTGGCGGGTCGGGTTCCGGTGTATACAGTTGTGCAAAAGCCGGGTGCATCGGACACATGAAGGGATGGTGTCCCCCAGAGCTCAAAGTGCAGGGTGGGGACGGATGCCGTAGTGCCTGCAACGTCTTTCATACACCAGAATACTGTTGCAGCCATTCGTTCTC...

Protein

Download Protein FASTA

642 aa · TkA01G194940|TK1151|PROTEIN

MTMVAFKLQVNGTDEYYVDNIDGFNLPVSVDAIGGSGSGVYSCAKAGCIGHMKGWCPPELKVQGGDGCRSACNVFHTPEYCCSHSFSTPSTCKPTSYAKAFQRVCPRSRTLPYNTHNSTGIFTCEGADYIVRFCLAAGTFSTIQVGGQLRCTDRLTSTNGTFTLGFYGVHFGSLGIWYSNDENNKVWVAKPTLSTSGNHVLSIDPNTGSLIIIAGGSTLRVIADVQTGPSSNVMATLGEDGRLRLIANTTVLWQTPFHPF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G194940`
TK1151 ID	TkA01G194940
OH-1004 ID	LXL04_029217
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	34.800
Protein coverage (%)	TK1151 94.860 / OH-1004 46.317 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G194940

Location Chr01:49834279-49842010 (-)

Description Similar to CES101: G-type lectin S-receptor-like serine/threonine-protein kinase CES101

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g11300`	G-type lectin S-receptor-like serine/threonine-protein kinase At1g11300.	No verified direct reference in this release
`At4g27290`	G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290.	No verified direct reference in this release
`At1g11330`	G-type lectin S-receptor-like serine/threonine-protein kinase At1g11330.	No verified direct reference in this release
`At4g23180`	Cysteine-rich receptor-like protein kinase 10.	No verified direct reference in this release
`At4g23260`	Cysteine-rich receptor-like protein kinase 18.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_029217 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006955 immune response Biological Process

GO:0007165 signal transduction Biological Process

GO:0009620 response to fungus Biological Process

GO:0045087 innate immune response Biological Process

GO:0005634 nucleus Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0005516 calmodulin binding Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0030246 carbohydrate binding Molecular Function

GO:0106310 protein serine kinase activity Molecular Function

KEGG gene cross-reference

ath:AT1G67520

ath:AT3G16030

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.840

Rank 1 · TkA01G194940 · TK1151

Cytoplasm0.106

Rank 2 · TkA01G194940 · TK1151

Nucleus0.074

Rank 3 · TkA01G194940 · TK1151

Endoplasmic reticulum0.070

Rank 4 · TkA01G194940 · TK1151

Lysosome / Vacuole0.026

Rank 5 · TkA01G194940 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00314Thaumatin1-134 aa

PF01453B_lectin186-258 aa

PF06143Baculo_11_kDa271-306 aa

PF00069Pkinase331-599 aa

PF03109ABC1332-358 aa

PF07714PK_Tyr_Ser-Thr333-600 aa

PF03109ABC1399-484 aa

PF17667Pkinase_fungal438-522 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G194940	`PF00314`	Thaumatin	1	134	2.4e-32	113.0
TkA01G194940	`PF01453`	B_lectin	186	258	0.062	14.5
TkA01G194940	`PF06143`	Baculo_11_kDa	271	306	0.19	12.1
TkA01G194940	`PF00069`	Pkinase	331	599	7.4e-47	160.7
TkA01G194940	`PF03109`	ABC1	332	358	7.9e-05	22.7
TkA01G194940	`PF07714`	PK_Tyr_Ser-Thr	333	600	7.4e-45	154.0
TkA01G194940	`PF03109`	ABC1	399	484	7.9e-05	22.7
TkA01G194940	`PF17667`	Pkinase_fungal	438	522	0.0026	17.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SXB4`	Arabidopsis thaliana	sp\|Q9SXB4\|Y1130_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At1g11300	40.900%	Swiss-Prot	Medium
`O81832`	Arabidopsis thaliana	sp\|O81832\|Y4729_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290	43.400%	Swiss-Prot	Low
`Q9SXB8`	Arabidopsis thaliana	sp\|Q9SXB8\|Y1133_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At1g11330	43.400%	Swiss-Prot	Low
`Q8GYA4`	Arabidopsis thaliana	sp\|Q8GYA4\|CRK10_ARATH Cysteine-rich receptor-like protein kinase 10	46.600%	Swiss-Prot	Low
`Q8RX80`	Arabidopsis thaliana	sp\|Q8RX80\|CRK18_ARATH Cysteine-rich receptor-like protein kinase 18	45.700%	Swiss-Prot	Low

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