TkA01G182920 | RubberDandelionOmics

Gene overview

TkA01G182920

Reference: TK1151 Chr: Chr01 Coordinates: 46949803-46952075 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1812 bp · TkA01G182920|TK1151|cDNA

TACATTAATTCTTCATCCGATCAATTGATCGGAATACTGTTGTTGATCGAAAACAAAAAATGGATAACATCACCAAAGAGCAGACCCAACCAGAAGTAGGTTGGAAGAGGCCAAGAACGAAGATCGTGTGCACTTTGGGACCGGCTTCTCGGTCGATTCCGATGGTTGAGAAACTTCTAAGGGCAGGAATGAATGTCGCTCGCTTCAATTTTTCACACGGATCTCACGAGTACCACCAGGAAACCCTCGATAATCTTCGT...

CDS

Download CDS FASTA

1530 bp · TkA01G182920|TK1151|CDS

ATGGATAACATCACCAAAGAGCAGACCCAACCAGAAGTAGGTTGGAAGAGGCCAAGAACGAAGATCGTGTGCACTTTGGGACCGGCTTCTCGGTCGATTCCGATGGTTGAGAAACTTCTAAGGGCAGGAATGAATGTCGCTCGCTTCAATTTTTCACACGGATCTCACGAGTACCACCAGGAAACCCTCGATAATCTTCGTACCGCCCAGAAAAACACCGGTATTGAATGTGCAGTGATGCTCGATACCAAAGGTCCAGA...

Protein

Download Protein FASTA

509 aa · TkA01G182920|TK1151|PROTEIN

MDNITKEQTQPEVGWKRPRTKIVCTLGPASRSIPMVEKLLRAGMNVARFNFSHGSHEYHQETLDNLRTAQKNTGIECAVMLDTKGPEIRTGFLKDGKPIQVTQGKEITISTDYSIKGDENMICMSYKKLAHDVKPGSTILCSDGCITFTVLSCDTEKGLVRCRCENTWTLGERKNVNLPGVIVDLPTLTEKDQEDILKWGVPNNINLIALSFVRKGSDLVEVRKVLGEHAKTIVLMSKVENQEGVSNFDDILENTDAFMV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G182920`
TK1151 ID	TkA01G182920
OH-1004 ID	LXL04_004218
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G182920

Location Chr01:46949803-46952075 (+)

Description Similar to Pyruvate kinase, cytosolic isozyme

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g26390`	Key regulatory enzyme of the glycolytic pathway that catalyzes the final step of glycolysis, converting ADP and phosphoenolpyruvate (PEP) to ATP and pyruvate by essentially irreversible transphosphorylation.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_004218 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006096 glycolytic process Biological Process

GO:0006950 response to stress Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0000287 magnesium ion binding Molecular Function

GO:0004743 pyruvate kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0016301 kinase activity Molecular Function

GO:0030955 potassium ion binding Molecular Function

KEGG gene cross-reference

ath:AT4G26390

ddi:DDB_G0283247

gmx:547791

nta:107797877

sot:102601328

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.663

Rank 1 · TkA01G182920 · TK1151

Nucleus0.261

Rank 2 · TkA01G182920 · TK1151

Mitochondrion0.146

Rank 3 · TkA01G182920 · TK1151

Cell membrane0.102

Rank 4 · TkA01G182920 · TK1151

Endoplasmic reticulum0.050

Rank 5 · TkA01G182920 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00224PK19-343 aa

PF02887PK_C49-108 aa

PF03143GTP_EFTU_D395-110 aa

PF19294DACZ_N183-242 aa

PF03328HpcH_HpaI211-267 aa

PF19294DACZ_N312-335 aa

PF03328HpcH_HpaI316-335 aa

PF03143GTP_EFTU_D3341-353 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G182920	`PF00224`	PK	19	343	7.3e-150	499.3
TkA01G182920	`PF02887`	PK_C	49	108	1.5e-23	83.8
TkA01G182920	`PF03143`	GTP_EFTU_D3	95	110	0.051	14.6
TkA01G182920	`PF19294`	DACZ_N	183	242	0.022	15.1
TkA01G182920	`PF03328`	HpcH_HpaI	211	267	0.022	14.8
TkA01G182920	`PF19294`	DACZ_N	312	335	0.022	15.1
TkA01G182920	`PF03328`	HpcH_HpaI	316	335	0.022	14.8
TkA01G182920	`PF03143`	GTP_EFTU_D3	341	353	0.051	14.6
TkA01G182920	`PF02887`	PK_C	378	504	1.5e-23	83.8
TkA01G182920	`PF03143`	GTP_EFTU_D3	391	424	0.051	14.6
TkA01G182920	`PF03143`	GTP_EFTU_D3	442	492	0.051	14.6
TkA01G182920	`PF19294`	DACZ_N	467	506	0.022	15.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`O65595`	Arabidopsis thaliana	sp\|O65595\|KPYC_ARATH Probable pyruvate kinase, cytosolic isozyme	77.300%	Swiss-Prot	High

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