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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G175120
Reference: TK1151 Chr: Chr01 Coordinates: 44893098-44895257 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2058 bp · TkA01G175120|TK1151|cDNA

CCTCCTACGTTTTCTGCCCTTGTGCATCAAGTAATGAGTACGGAAAAGCGCGGTCGGTCGTCTCTGCATTCCATGTCGGCTTTGGTTTTAATTCCATGACACCATCAGCGAACCTTCAAGAAAGACTTGCCATTGACGCTTATACTCGACTCACCACTATTAAACGGACGAAGCAATGGTTTCCATTAGGATCTTCAAAAACATGATGATGAGAGATACAACTCAGTTATGGTCTCTAATGGCGAGTGTTACGTTCGTGT...

CDS

Download CDS FASTA

1413 bp · TkA01G175120|TK1151|CDS

ATGGTTTCCATTAGGATCTTCAAAAACATGATGATGAGAGATACAACTCAGTTATGGTCTCTAATGGCGAGTGTTACGTTCGTGTGGGCAATATTCAAGCAATGGTTTCCAGAAGAGCTTGGTACTCATATCGAAAACTATTTTCGAAAACTTGGAAGCTATTTCTACCCTTATATCACCATCGTTTTCCATGAATACCAACCATATGAGTTCCAGCGAAGCATAGCCTACACTGCTATCGAACAATACCTGGGCGCTAA...

Protein

Download Protein FASTA

470 aa · TkA01G175120|TK1151|PROTEIN

MVSIRIFKNMMMRDTTQLWSLMASVTFVWAIFKQWFPEELGTHIENYFRKLGSYFYPYITIVFHEYQPYEFQRSIAYTAIEQYLGANSSNRAKRLKANVIRDGKSVDLSIDDYEDVTDGFQGIKIWWSSRKKIPQQQALFARDDNEKRQRKLYTNGNKTSWSHIVFEHPSTFDTLAMDPEKKKDILNDLMTFVKSKDYYKKIGKSWKRGYLLYGPPGTGKSSMIAAMANFLNYDIYDLELTSVNDNTDLKKLLIGTSSKS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G175120
TK1151 IDTkA01G175120
OH-1004 IDLXL04_004278
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)93.100
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G175120
LocationChr01:44893098-44895257 (+)
DescriptionSimilar to At3g28580: AAA-ATPase At3g28580
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g28580 AAA-ATPase At3g28580. No verified direct reference in this release
At5g40010 Required to regulate morphology and anatomy during seed maturation. No verified direct reference in this release
At3g28510 AAA-ATPase At3g28510. No verified direct reference in this release
At3g28610 AAA-ATPase At3g28610. No verified direct reference in this release
At3g28540 AAA-ATPase At3g28540. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_004278 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000304 response to singlet oxygen Biological Process
GO:0006950 response to stress Biological Process
GO:0009409 response to cold Biological Process
GO:0009414 response to water deprivation Biological Process
GO:0009651 response to salt stress Biological Process
GO:0009737 response to abscisic acid Biological Process
GO:0010154 fruit development Biological Process
GO:0010431 seed maturation Biological Process
GO:0005634 nucleus Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0005783 endoplasmic reticulum Cellular Component
GO:0005886 plasma membrane Cellular Component
KEGG gene cross-reference
ath:AT3G28510
ath:AT3G28540
ath:AT3G28580
ath:AT3G28610
ath:AT5G40010
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.276
Rank 1 · TkA01G175120 · TK1151
Endoplasmic reticulum0.263
Rank 2 · TkA01G175120 · TK1151
Nucleus0.174
Rank 3 · TkA01G175120 · TK1151
Mitochondrion0.137
Rank 4 · TkA01G175120 · TK1151
Cell membrane0.128
Rank 5 · TkA01G175120 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF22737NNH627-51 aa
PF14363AAA_assoc36-129 aa
PF13401AAA_2273-101 aa
PF13476AAA_23143-151 aa
PF00910RNA_helicase145-198 aa
PF20720nSTAND3192-277 aa
PF13191AAA_16202-234 aa
PF13604AAA_30203-233 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G175120PF22737NNH627510.1912.5
TkA01G175120PF14363AAA_assoc361291.2e-2280.8
TkA01G175120PF13401AAA_22731010.007317.3
TkA01G175120PF13476AAA_231431510.007517.7
TkA01G175120PF00910RNA_helicase1451980.00318.7
TkA01G175120PF20720nSTAND31922770.0007320.0
TkA01G175120PF13191AAA_162022340.0004821.4
TkA01G175120PF13604AAA_302032330.2212.0
TkA01G175120PF12775AAA_72072500.01715.4
TkA01G175120PF13555AAA_292082310.01216.1
TkA01G175120PF05673DUF8152092660.003317.3
TkA01G175120PF00004AAA2103554.2e-1970.0
TkA01G175120PF05496RuvB_N2102670.001119.5
TkA01G175120PF13086AAA_112102580.001818.8
TkA01G175120PF13401AAA_222102490.007317.3
TkA01G175120PF20030bpMoxR2102450.01315.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LJJ7Arabidopsis thalianasp|Q9LJJ7|AATP9_ARATH AAA-ATPase At3g2858055.200%Swiss-ProtHigh
Q9FLD5Arabidopsis thalianasp|Q9FLD5|ASD_ARATH AAA-ATPase ASD, mitochondrial54.700%Swiss-ProtHigh
Q9LH84Arabidopsis thalianasp|Q9LH84|AATP5_ARATH AAA-ATPase At3g2851050.800%Swiss-ProtHigh
Q9LJJ5Arabidopsis thalianasp|Q9LJJ5|AATPB_ARATH AAA-ATPase At3g2861050.400%Swiss-ProtHigh
Q9LH82Arabidopsis thalianasp|Q9LH82|AATP7_ARATH AAA-ATPase At3g2854049.500%Swiss-ProtMedium

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