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How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G134250
Reference: TK1151 Chr: Chr01 Coordinates: 34087073-34088911 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA No cDNA sequence available

cDNA

No cDNA sequence is available for this reference.

CDS

Download CDS FASTA

675 bp · TkA01G134250|TK1151|CDS

ATGGAGAAAGTCATGAACATATTAAAACCAAAACCTAATCCACAACAGCTCTTACGCGATTGGCAACGCCGTCTCCGCCAAGAAACTCGCAACATCGACCGCCAGATTCGGGATATCCAGAGAGAAGAGAAAAACGTCCAGAAAGCAATCCGAGAGGCTGCCAAGAGAAACGATATGGGTTCTGCTAAGTCACTCGCTAAAGAAATTGTGCAATCCAGAAGGACTGTAAACCGCCTTTATGAAAACAAAGCCCAGTTGAA...

Protein

Download Protein FASTA

224 aa · TkA01G134250|TK1151|PROTEIN

MEKVMNILKPKPNPQQLLRDWQRRLRQETRNIDRQIRDIQREEKNVQKAIREAAKRNDMGSAKSLAKEIVQSRRTVNRLYENKAQLNSISMHLGESVAIARTVGHLSKSAEVMKIVNNLMKAPEMAVTMQEFNKEMTKAGVIEEMVNDAVDSALDSDDIEDEIDEEVDKVLTALAGETAAQLPEAVRKEKLKQPANANQDAEDEGVDDEEELEEIRARLAKVRS

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA01G134250
TK1151 IDTkA01G134250
OH-1004 IDLXL04_004554
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G134250
LocationChr01:34087073-34088911 (+)
DescriptionSimilar to VPS24-1: Vacuolar protein sorting-associated protein 24 homolog 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g22950 Component of the ESCRT-III complex, which is required for multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. No verified direct reference in this release
At3g45000 Component of the ESCRT-III complex, which is required for multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_004554 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0015031 protein transport Biological Process
GO:0032509 endosome transport via multivesicular body sorting pathway Biological Process
GO:0045324 late endosome to vacuole transport Biological Process
GO:0070676 intralumenal vesicle formation Biological Process
GO:0000815 ESCRT III complex Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005770 late endosome Cellular Component
GO:0005771 multivesicular body Cellular Component
GO:0005829 cytosol Cellular Component
GO:0031902 late endosome membrane Cellular Component
KEGG gene cross-reference
ath:AT3G45000
ath:AT5G22950
dre:406621
xtr:548983
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.803
Rank 1 · TkA01G134250 · TK1151
Nucleus0.256
Rank 2 · TkA01G134250 · TK1151
Cell membrane0.077
Rank 3 · TkA01G134250 · TK1151
Mitochondrion0.072
Rank 4 · TkA01G134250 · TK1151
Endoplasmic reticulum0.054
Rank 5 · TkA01G134250 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF15346ARGLU20-57 aa
PF03357Snf721-188 aa
PF01920Prefoldin_224-52 aa
PF16925TetR_C_1333-35 aa
PF07631PSD435-82 aa
PF15112DUF455937-57 aa
PF22736NNH543-86 aa
PF05327RRN344-83 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G134250PF15346ARGLU20570.02115.4
TkA01G134250PF03357Snf7211889.9e-34117.2
TkA01G134250PF01920Prefoldin_224521.69.5
TkA01G134250PF16925TetR_C_1333351.99.6
TkA01G134250PF07631PSD435820.0315.5
TkA01G134250PF15112DUF455937572.88.1
TkA01G134250PF22736NNH543861.59.5
TkA01G134250PF05327RRN344837.95.6
TkA01G134250PF13443HTH_2650850.03715.0
TkA01G134250PF14833NAD_binding_1160900.07114.1
TkA01G134250PF02436PYC_OADA62621.49.3
TkA01G134250PF01920Prefoldin_2681201.69.5
TkA01G134250PF16925TetR_C_13851351.99.6
TkA01G134250PF07631PSD41031770.0315.5
TkA01G134250PF05327RRN31082157.95.6
TkA01G134250PF15112DUF45591092212.88.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FFB3Arabidopsis thalianasp|Q9FFB3|VP241_ARATH Vacuolar protein sorting-associated protein 24 homolog 175.100%Swiss-ProtHigh
Q9LXH5Arabidopsis thalianasp|Q9LXH5|VP242_ARATH Putative vacuolar protein sorting-associated protein 24 homolog 273.600%Swiss-ProtHigh

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