TkA01G130960 | RubberDandelionOmics

Gene overview

TkA01G130960

Reference: TK1151 Chr: Chr01 Coordinates: 33089264-33092875 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1810 bp · TkA01G130960|TK1151|cDNA

GTTTTTCTGTTTTTGTATGTTTTTTTTCTGATTGAGTGCAGAAGGTATATTTATGATTTACCTTAGTCATACAAGGCATTGTGATCAGAGGAATAGTTCAGTAAAGTCTCTTTCTTGACAGCAATTGACCATTCTTTACACTCCATCTTCACCAATCTTATCCCTTTCTCATAAATTCACTTCAATTTTAAACTAACTTTACGCTCAAACTTTTTGATTACCAAACCCTTGAAAAAAGTTTCATATATCAGCCAAATTAA...

CDS

Download CDS FASTA

1374 bp · TkA01G130960|TK1151|CDS

ATGGGGAAAGTCCATTTTTTCGCGTTTTCAGCAGTGTTCTTCTTTCTTCCACTTTTCCATGGAGAATTCGCCATGGCTGCCGGGACCTCAGATGGTTCAGAACAATGGGGTTACGTCGAAGTTAGACCTAAAGCTCATATGTTCTGGTGGTACTATAAAAGTCCTTATCGAACACAAGATTCAAACAACCCATGGCCTGTAATTCTATGGTTACAAGGTGGACCTGGTGCTTCAGGAGTTGGAACTGGTAATTTTGAAGA...

Protein

Download Protein FASTA

457 aa · TkA01G130960|TK1151|PROTEIN

MGKVHFFAFSAVFFFLPLFHGEFAMAAGTSDGSEQWGYVEVRPKAHMFWWYYKSPYRTQDSNNPWPVILWLQGGPGASGVGTGNFEEVGPLDSFLKPRNSTWLQKADLLFVDNPVGTGYSFVEDKELLVKTDEEAATDLTTLLIELFNKNETLQKSPLYIVAESYGGKYAVTLGLSALKAIEDKKLKLILGGIALGDSWISPEDFVVSWGPLLKDVSRIGDKGLTEANSLVEKIKQQIQNGKLKDATETWSDLEEVISAN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G130960`
TK1151 ID	TkA01G130960
OH-1004 ID	LXL04_013105
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	68.100
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G130960

Location Chr01:33089264-33092875 (-)

Description Similar to SCPL51: Serine carboxypeptidase-like 51

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g27920`	Probable carboxypeptidase.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_013105 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006508 proteolysis Biological Process

GO:0042573 retinoic acid metabolic process Biological Process

GO:0045776 negative regulation of blood pressure Biological Process

GO:0097746 blood vessel diameter maintenance Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005773 vacuole Cellular Component

GO:0048471 perinuclear region of cytoplasm Cellular Component

GO:0070062 extracellular exosome Cellular Component

GO:0004185 serine-type carboxypeptidase activity Molecular Function

KEGG gene cross-reference

ath:AT2G27920

ath:AT3G45010

hsa:59342

mmu:74617

rno:114861

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.554

Rank 1 · TkA01G130960 · TK1151

Extracellular0.137

Rank 2 · TkA01G130960 · TK1151

Cytoplasm0.106

Rank 3 · TkA01G130960 · TK1151

Endoplasmic reticulum0.101

Rank 4 · TkA01G130960 · TK1151

Golgi apparatus0.099

Rank 5 · TkA01G130960 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00450Peptidase_S1030-451 aa

PF12146Hydrolase_4116-179 aa

PF00542Ribosomal_L12213-250 aa

PF12146Hydrolase_4363-389 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G130960	`PF00450`	Peptidase_S10	30	451	7e-80	270.1
TkA01G130960	`PF12146`	Hydrolase_4	116	179	0.26	11.3
TkA01G130960	`PF00542`	Ribosomal_L12	213	250	0.062	14.3
TkA01G130960	`PF12146`	Hydrolase_4	363	389	0.26	11.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q67Y83`	Arabidopsis thaliana	sp\|Q67Y83\|SCP51_ARATH Serine carboxypeptidase-like 51	67.600%	Swiss-Prot	High

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