TkA01G130620 | RubberDandelionOmics

Gene overview

TkA01G130620

Reference: TK1151 Chr: Chr01 Coordinates: 32978964-32986914 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1881 bp · TkA01G130620|TK1151|cDNA

AAAAAGTTAACGGTAAAAGTATCACGGGGCCATGGGGGATAAAATCCACGTGGATACAAGACAACCACCCGAAACCTCCACAGTCGTCCTCCTCCCCGCCAACCACCCACCACCATTACCGGATTTCACATACAAACACACACACACAAGTTCGCATAGAATCAGATTCCCAAACATGATCAGCTTTACTAACGAAATTCAGGTTGCGAAAATGTCATTGAAATCTATAACTCCGAGCTCTTCCTCCTTACATTTCCCGC...

CDS

Download CDS FASTA

1551 bp · TkA01G130620|TK1151|CDS

ATGGGGGATAAAATCCACGTGGATACAAGACAACCACCCGAAACCTCCACAGTCGTCCTCCTCCCCGCCAACCACCCACCACCATTACCGGATTTCACATACAAACACACACACACAAGTTCGCATAGAATCAGATTCCCAAACATGATCAGCTTTACTAACGAAATTCAGGTTGCGAAAATGTCATTGAAATCTATAACTCCGAGCTCTTCCTCCTTACATTTCCCGCGTTTATCGGTGGTTAATTCACCGACATACAT...

Protein

Download Protein FASTA

516 aa · TkA01G130620|TK1151|PROTEIN

MGDKIHVDTRQPPETSTVVLLPANHPPPLPDFTYKHTHTSSHRIRFPNMISFTNEIQVAKMSLKSITPSSSSLHFPRLSVVNSPTYILFTRCTLIRPTYPAISLRKSCYFLFPIPLEVLSTGRSNRSTKSTEDGRQETPTGNNDDDDSSDETYQSSDDLDKVTATDSKRSISSLSDALNIGSRDPVYEVVEVSSKGMVSTRKVNRRHLLKSSGLRPRDIRSVDPSLWLTNTMPSLLVRENAILLNLGSLRAIAMQECVFI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G130620`
TK1151 ID	TkA01G130620
OH-1004 ID	LXL04_004614
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	96.300
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G130620

Location Chr01:32978964-32986914 (+)

Description Similar to MRS2-11: Magnesium transporter MRS2-11, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g22830`	High-affinity magnesium transporter that mediates the influx of magnesium in chloroplast.	A novel family of magnesium transport genes in Arabidopsis.2001 · DOI: 10.1105/tpc.010352

Rice

Reference gene ID	Possible function	Papers / DOI
`UniProt: B8APK3`	Magnesium transporter that may mediate the influx of magnesium in chloroplast.	No verified direct reference in this release
`Os03g0684400`	Magnesium transporter that may mediate the influx of magnesium in chloroplast.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_004614 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0010027 thylakoid membrane organization Biological Process

GO:0010117 photoprotection Biological Process

GO:0010960 magnesium ion homeostasis Biological Process

GO:0015693 magnesium ion transport Biological Process

GO:0045016 mitochondrial magnesium ion transmembrane transport Biological Process

GO:1903830 magnesium ion transmembrane transport Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0005743 mitochondrial inner membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009536 plastid Cellular Component

GO:0009941 chloroplast envelope Cellular Component

GO:0031969 chloroplast membrane Cellular Component

KEGG gene cross-reference

ath:AT5G22830

dosa:Os03g0684400

spo:2540385

yli:2911169

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.942

Rank 1 · TkA01G130620 · TK1151

Mitochondrion0.045

Rank 2 · TkA01G130620 · TK1151

Nucleus0.040

Rank 3 · TkA01G130620 · TK1151

Cytoplasm0.029

Rank 4 · TkA01G130620 · TK1151

Cell membrane0.020

Rank 5 · TkA01G130620 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF22099MRS2-like198-446 aa

PF01544CorA297-365 aa

PF01544CorA397-504 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G130620	`PF22099`	MRS2-like	198	446	1.4e-33	116.8
TkA01G130620	`PF01544`	CorA	297	365	5.4e-07	29.9
TkA01G130620	`PF01544`	CorA	397	504	5.4e-07	29.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q058N4`	Arabidopsis thaliana	sp\|Q058N4\|MRS2B_ARATH Magnesium transporter MRS2-11, chloroplastic	76.000%	Swiss-Prot	Medium
`B8APK3`	Oryza sativa subsp. indica	sp\|B8APK3\|MRS2A_ORYSI Magnesium transporter MRS2-A, chloroplastic	72.500%	Swiss-Prot	Medium
`Q9AUK4`	Oryza sativa subsp. japonica	sp\|Q9AUK4\|MRS2A_ORYSJ Magnesium transporter MRS2-A, chloroplastic	72.500%	Swiss-Prot	Medium

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