TkA01G102910 | RubberDandelionOmics

Gene overview

TkA01G102910

Reference: TK1151 Chr: Chr01 Coordinates: 26101733-26108933 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

4141 bp · TkA01G102910|TK1151|cDNA

TAGAGGCTTGATTCTATATTGGGCCATAGGCAGATCGTTAGCTTAGTCGACAAGCACTGCTGCCTGTGAGAAAAACTCTGCGGGCACGATCGATTGAGCTCTGTGGTTCGGAGTTCCAACGACTAAAACAAGATCTGCCGGAATCCGGTACCAGAGTTGACTCGTTCGGGTTTTCTTCACCACCGTAACATGGCCGATCCGGCGTACTCTGCCCTCAGAAAAATGCTACTGGACGAGATCACGCCGGTGGTCATGGTTCT...

CDS

Download CDS FASTA

2985 bp · TkA01G102910|TK1151|CDS

ATGGCCGATCCGGCGTACTCTGCCCTCAGAAAAATGCTACTGGACGAGATCACGCCGGTGGTCATGGTTCTCCCTACGCCACTAGTAGAAGAACGATGCCAAAAAAATGGACTCTCATTTGTCCAAATGCTCACTCCGTTTTGCTTTAGTCATTCACGCACAAAAACGTTGATGATCGATTGTGTTGTGCCATTTCTCCCTGTTCGTACAGCTAGTGACCAACCCTACAGGCTTCAAAAGTTCAAATTACGAATGGTTTA...

Protein

Download Protein FASTA

994 aa · TkA01G102910|TK1151|PROTEIN

MADPAYSALRKMLLDEITPVVMVLPTPLVEERCQKNGLSFVQMLTPFCFSHSRTKTLMIDCVVPFLPVRTASDQPYRLQKFKLRMVYASDVRQPNVEVTKERLKQVITDAGNIEDSDLYLEPSSIETISTSSQPDFVPTWFQFFNKEFVRSVSFSDHEAFDHPVACLLVVSSNDKDPINKFVDLFNMNQLPPLLNEGAMDPKIPKVFVLLHDNQDGSSERASKILAEMRNTFGANDCRLLCINSLQDGAPAHEPNPWEFY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G102910`
TK1151 ID	TkA01G102910
OH-1004 ID	LXL04_004833
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	88.100
Protein coverage (%)	TK1151 98.491 / OH-1004 81.832 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkA01G102910`
Location	Chr01:26101733-26108933 (-)
Description	Similar to TRAPPC8: Trafficking protein particle complex subunit 8
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_004833` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006886 intracellular protein transport Biological Process GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport Biological Process GO:0007030 Golgi organization Biological Process GO:0016192 vesicle-mediated transport Biological Process GO:0016236 macroautophagy Biological Process GO:0032964 collagen biosynthetic process Biological Process GO:0048208 COPII vesicle coating Biological Process GO:0051321 meiotic cell cycle Biological Process GO:0099022 vesicle tethering Biological Process GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005829 cytosol Cellular Component
KEGG gene cross-reference	cel:CELE_F46F11.9 hsa:22878 spo:2539665 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.529

Rank 1 · TkA01G102910 · TK1151

Golgi apparatus0.278

Rank 2 · TkA01G102910 · TK1151

Nucleus0.181

Rank 3 · TkA01G102910 · TK1151

Lysosome / Vacuole0.135

Rank 4 · TkA01G102910 · TK1151

Endoplasmic reticulum0.130

Rank 5 · TkA01G102910 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12739TRAPPC-Trs8515-391 aa

PF29212TP008898-162 aa

PF13428TPR_14352-387 aa

PF07719TPR_2353-371 aa

PF13424TPR_12353-371 aa

PF00515TPR_1353-371 aa

PF14938SNAP400-532 aa

PF13428TPR_14405-442 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G102910	`PF12739`	TRAPPC-Trs85	15	391	1.8e-76	258.9
TkA01G102910	`PF29212`	TP0088	98	162	0.19	12.7
TkA01G102910	`PF13428`	TPR_14	352	387	0.00011	23.2
TkA01G102910	`PF07719`	TPR_2	353	371	0.0026	18.5
TkA01G102910	`PF13424`	TPR_12	353	371	0.075	14.0
TkA01G102910	`PF00515`	TPR_1	353	371	2.4	8.8
TkA01G102910	`PF14938`	SNAP	400	532	0.0021	18.3
TkA01G102910	`PF13428`	TPR_14	405	442	0.00011	23.2
TkA01G102910	`PF13176`	TPR_7	410	426	0.21	12.5
TkA01G102910	`PF07719`	TPR_2	411	423	0.0026	18.5
TkA01G102910	`PF00515`	TPR_1	414	420	2.4	8.8
TkA01G102910	`PF13181`	TPR_8	463	486	0.065	14.2
TkA01G102910	`PF13176`	TPR_7	463	485	0.21	12.5
TkA01G102910	`PF13428`	TPR_14	465	493	0.00011	23.2
TkA01G102910	`PF13424`	TPR_12	465	522	0.075	14.0
TkA01G102910	`PF00515`	TPR_1	465	487	2.4	8.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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