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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G094980
Reference: TK1151 Chr: Chr01 Coordinates: 23998031-24002608 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2378 bp · TkA01G094980|TK1151|cDNA

CCCAACTCAAACATCTGACCTCCTCCCGCCAAAATCAAACGAAAAAGTCACAGTAAACCCTTTGAATTGCGTTCTTTTATCTTAAGATTTATTGCACGGACAGATAGAGGATGACGATGATGAGCGCCTGGAAGCAAATCTCAAGTAATGGAGGCCAAACCGAACAAATTTTGGCGCAATATTTCCCTCAAATCGACCACAAACACGGCGATTGGAAGAAGAAGCTGCAACTGACATCGACCCTTTTCGAACAATTTTTC...

CDS

Download CDS FASTA

2367 bp · TkA01G094980|TK1151|CDS

ATGACGATGATGAGCGCCTGGAAGCAAATCTCAAGTAATGGAGGCCAAACCGAACAAATTTTGGCGCAATATTTCCCTCAAATCGACCACAAACACGGCGATTGGAAGAAGAAGCTGCAACTGACATCGACCCTTTTCGAACAATTTTTCTCCACTGCTGACGGATTAGAACTCATCTCTCAGGTAAAAAAGGAAGACATATTGTTCATTCTACCCCTTGATTTCCAACATTTCCGGAAAGTATGTATGCTTGAAGAATT...

Protein

Download Protein FASTA

788 aa · TkA01G094980|TK1151|PROTEIN

MTMMSAWKQISSNGGQTEQILAQYFPQIDHKHGDWKKKLQLTSTLFEQFFSTADGLELISQVKKEDILFILPLDFQHFRKVCMLEEFYDALERNPKEALLCMSAAVHKVLYSKSNDEELDDSTKVNIRLHNHPDSMIALKNLKAAYIERLVSVRGTVVKVSTVKPLVVQMSFTCAKCGTTIARDFPDGKFSPPSVCVIQGCKSRSFNPIRSTAIPIDFQKIRIQELLKSEHHEEGRVPRTVECELVEDLVDTCIPGDVVT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G094980
TK1151 IDTkA01G094980
OH-1004 IDLXL04_004943
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)99.500
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G094980
LocationChr01:23998031-24002608 (+)
DescriptionSimilar to MCM8: Probable DNA helicase MCM8
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g09660 Probable DNA helicase that plays a role in meiotic double-strand break (DSB) repair, but does not seem to be required for recombination with the homologous chromosome.
MCM8 is required for a pathway of meiotic double-strand break repair independent of DMC1 in Arabidopsis thaliana.2013 · DOI: 10.1371/journal.pgen.1003165

Rice

Reference gene IDPossible functionPapers / DOI
Os05g0464100 Probable DNA helicase that may play a role in DNA repair during meiosis. No verified direct reference in this release
UniProt: B8AZ14 Probable DNA helicase that may play a role in DNA repair during meiosis. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_004943 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000724 double-strand break repair via homologous recombination Biological Process
GO:0006260 DNA replication Biological Process
GO:0006974 DNA damage response Biological Process
GO:0007140 male meiotic nuclear division Biological Process
GO:0007143 female meiotic nuclear division Biological Process
GO:0007292 female gamete generation Biological Process
GO:0009555 pollen development Biological Process
GO:0036298 recombinational interstrand cross-link repair Biological Process
GO:0048232 male gamete generation Biological Process
GO:0050821 protein stabilization Biological Process
GO:0051321 meiotic cell cycle Biological Process
GO:0071168 protein localization to chromatin Biological Process
KEGG gene cross-reference
ath:AT3G09660
dosa:Os05g0464100
mmu:66634
rno:296178
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.854
Rank 1 · TkA01G094980 · TK1151
Cytoplasm0.159
Rank 2 · TkA01G094980 · TK1151
Mitochondrion0.069
Rank 3 · TkA01G094980 · TK1151
Cell membrane0.021
Rank 4 · TkA01G094980 · TK1151
Golgi apparatus0.011
Rank 5 · TkA01G094980 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05496RuvB_N54-92 aa
PF14551MCM_N71-131 aa
PF26065MCM8_N83-124 aa
PF17207MCM_OB139-268 aa
PF00493MCM340-554 aa
PF00158Sigma54_activat379-502 aa
PF01078Mg_chelatase382-413 aa
PF07728AAA_5390-527 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G094980PF05496RuvB_N54920.3511.3
TkA01G094980PF14551MCM_N711310.00917.1
TkA01G094980PF26065MCM8_N831240.02815.0
TkA01G094980PF17207MCM_OB1392682.1e-2796.1
TkA01G094980PF00493MCM3405541.8e-88296.2
TkA01G094980PF00158Sigma54_activat3795028.1e-0523.1
TkA01G094980PF01078Mg_chelatase3824131.8e-0731.5
TkA01G094980PF07728AAA_53905275.7e-0730.3
TkA01G094980PF07726AAA_33905055.2e-0627.1
TkA01G094980PF13191AAA_163904250.08914.0
TkA01G094980PF13401AAA_223904800.1912.7
TkA01G094980PF05496RuvB_N3904100.3511.3
TkA01G094980PF00004AAA3915020.08914.0
TkA01G094980PF01078Mg_chelatase4395101.8e-0731.5
TkA01G094980PF26065MCM8_N4664830.02815.0
TkA01G094980PF17855MCM_lid6076908.9e-2794.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SF37Arabidopsis thalianasp|Q9SF37|MCM8_ARATH Probable DNA helicase MCM870.200%Swiss-ProtHigh
B9FKM7Oryza sativa subsp. japonicasp|B9FKM7|MCM8_ORYSJ Probable DNA helicase MCM865.000%Swiss-ProtHigh
B8AZ14Oryza sativa subsp. indicasp|B8AZ14|MCM8_ORYSI Probable DNA helicase MCM865.000%Swiss-ProtHigh

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