TkA01G083180 | RubberDandelionOmics

Gene overview

TkA01G083180

Reference: TK1151 Chr: Chr01 Coordinates: 21189501-21198637 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1766 bp · TkA01G083180|TK1151|cDNA

CAAAATGTGTGGAGAAAATTGGAATTTGTGTACATTCCCACTTTACTTCATTTAATCATCCAGACTCTATATATATACCAAATGCTCCCCTTATCCATACAAACATAGAGCAAAAATCCTATTTGAATCTATAGTTGCATAATGGAGTCGGCTCGCATTCTTGATGTTCTTGACAAGAAAACCATTTTGGTCACGGGTGCTACTGGTTTTCTAGCAAAAGTTTTTGTGGAGAAGATACTTAGAGTTCAACCAAACGTGAA...

CDS

Download CDS FASTA

1476 bp · TkA01G083180|TK1151|CDS

ATGGAGTCGGCTCGCATTCTTGATGTTCTTGACAAGAAAACCATTTTGGTCACGGGTGCTACTGGTTTTCTAGCAAAAGTTTTTGTGGAGAAGATACTTAGAGTTCAACCAAACGTGAAGAAGCTATATCTCCTTCTAAGAGCAACCGATGCTAAGTCTGCCTTACAACGCTTCAACACCGAGGCAATAGAAACGGACTTGTTTAAAGTCCTGAAAGAGAAGTACAACACAAACCTACAAAACTTTTTGTCCGAAAAAGT...

Protein

Download Protein FASTA

491 aa · TkA01G083180|TK1151|PROTEIN

MESARILDVLDKKTILVTGATGFLAKVFVEKILRVQPNVKKLYLLLRATDAKSALQRFNTEAIETDLFKVLKEKYNTNLQNFLSEKVILVPGDITCENLGMKDSFMKEQMWRDVEVVVNAAASTKFHERYDVALDINTCGAKFVLDFAKKCINVKLLLHVSTAYVSVEESGLILENPCYLGEKIDIQHEQRIINDRLKVLEYDNANEEDVKFAMRDLGKQRANHYGWPNTYVFTKALGEIILEKFKGDVPLVILRPTIIT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G083180`
TK1151 ID	TkA01G083180
OH-1004 ID	LXL04_005049
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	73.600
Protein coverage (%)	TK1151 98.371 / OH-1004 99.588 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G083180

Location Chr01:21189501-21198637 (+)

Description Similar to Alcohol-forming fatty acyl-CoA reductase

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g33790`	Catalyzes the reduction of fatty acyl-CoA to fatty alcohols.	CER4 encodes an alcohol-forming fatty acyl-coenzyme A reductase involved in cuticular wax production in Arabidopsis.2006 · DOI: 10.1104/pp.106.086785
`At5g22500`	Catalyzes the reduction of fatty acyl-CoA to fatty alcohols.	Three Arabidopsis fatty acyl-coenzyme A reductases, FAR1, FAR4, and FAR5, generate primary fatty alcohols associated with suberin deposition.2010 · DOI: 10.1104/pp.110.158238 Identification of an Arabidopsis fatty alcohol:caffeoyl-Coenzyme A acyltransferase required for the synthesis of alkyl hydroxycinnamates in root waxes.2012 · DOI: 10.1104/pp.112.201822
`At3g44540`	Catalyzes the reduction of fatty acyl-CoA to fatty alcohols.	Three Arabidopsis fatty acyl-coenzyme A reductases, FAR1, FAR4, and FAR5, generate primary fatty alcohols associated with suberin deposition.2010 · DOI: 10.1104/pp.110.158238 Identification of an Arabidopsis fatty alcohol:caffeoyl-Coenzyme A acyltransferase required for the synthesis of alkyl hydroxycinnamates in root waxes.2012 · DOI: 10.1104/pp.112.201822
`At3g44560`	Catalyzes the reduction of fatty acyl-CoA to fatty alcohols.	Identification of amino acids conferring chain length substrate specificities on fatty alcohol-forming reductases FAR5 and FAR8 from Arabidopsis thaliana.2013 · DOI: 10.1074/jbc.m113.499715

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_005049 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009611 response to wounding Biological Process

GO:0009651 response to salt stress Biological Process

GO:0010025 wax biosynthetic process Biological Process

GO:0010345 suberin biosynthetic process Biological Process

GO:0035336 long-chain fatty-acyl-CoA metabolic process Biological Process

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0080019 alcohol-forming very long-chain fatty acyl-CoA reductase activity Molecular Function

GO:0102965 alcohol-forming long-chain fatty acyl-CoA reductase activity Molecular Function

KEGG gene cross-reference

ag:AAD38039

ath:AT3G44540

ath:AT3G44550

ath:AT4G33790

ath:AT5G22500

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.259

Rank 1 · TkA01G083180 · TK1151

Peroxisome0.226

Rank 2 · TkA01G083180 · TK1151

Cytoplasm0.174

Rank 3 · TkA01G083180 · TK1151

Mitochondrion0.136

Rank 4 · TkA01G083180 · TK1151

Cell membrane0.071

Rank 5 · TkA01G083180 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05368NmrA12-65 aa

PF04321RmlD_sub_bind14-31 aa

PF01370Epimerase15-165 aa

PF02719Polysacc_synt_215-162 aa

PF01118Semialdhyde_dh15-81 aa

PF010733Beta_HSD16-166 aa

PF07993NAD_binding_417-312 aa

PF04321RmlD_sub_bind109-165 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G083180	`PF05368`	NmrA	12	65	0.0037	17.6
TkA01G083180	`PF04321`	RmlD_sub_bind	14	31	0.016	15.1
TkA01G083180	`PF01370`	Epimerase	15	165	4.5e-06	27.0
TkA01G083180	`PF02719`	Polysacc_synt_2	15	162	0.0016	18.4
TkA01G083180	`PF01118`	Semialdhyde_dh	15	81	0.16	13.1
TkA01G083180	`PF01073`	3Beta_HSD	16	166	0.0006	19.7
TkA01G083180	`PF07993`	NAD_binding_4	17	312	1.8e-70	237.7
TkA01G083180	`PF04321`	RmlD_sub_bind	109	165	0.016	15.1
TkA01G083180	`PF01118`	Semialdhyde_dh	181	221	0.16	13.1
TkA01G083180	`PF05368`	NmrA	224	251	0.0037	17.6
TkA01G083180	`PF01370`	Epimerase	229	332	4.5e-06	27.0
TkA01G083180	`PF01073`	3Beta_HSD	290	320	0.0006	19.7
TkA01G083180	`PF04321`	RmlD_sub_bind	305	334	0.016	15.1
TkA01G083180	`PF03015`	Sterile	387	482	1.2e-13	51.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q93ZB9`	Arabidopsis thaliana	sp\|Q93ZB9\|FACR3_ARATH Fatty acyl-CoA reductase 3	53.500%	Swiss-Prot	High
`Q39152`	Arabidopsis thaliana	sp\|Q39152\|FACR1_ARATH Fatty acyl-CoA reductase 1	50.900%	Swiss-Prot	High
`Q9LXN3`	Arabidopsis thaliana	sp\|Q9LXN3\|FACR4_ARATH Probable fatty acyl-CoA reductase 4	51.100%	Swiss-Prot	High
`Q1PEI6`	Arabidopsis thaliana	sp\|Q1PEI6\|FACR8_ARATH Fatty acyl-CoA reductase 8	49.500%	Swiss-Prot	Medium

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