LXL04_005049 | RubberDandelionOmics

Gene overview

LXL04_005049

Reference: OH-1004 Chr: Chr01 Coordinates: 153728193-153732635 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1458 bp · LXL04_005049|LXL04_005049|OH1004|cDNA

ATGGAGTTGGGTCCCATTCTTGATGTTCTTGACAAGAAAACCATTTTGGTCACTGGCGCTACTGGTTTTCTGGCAAAAATTTTCGTGGAGAAGATACTTAGAGTTCAACCAAATGTGAAGAAGCTATATCTTCTTGTGAGAGCAACTGATGCCAAGTCCGCCTTACAACGCTTCAACACCGAGGTAGTAGCAACGGACTTGTTTAAAGTCCTGAAAGAGAAGTACCATACAAACCTGCCAAACTTTCTATCCGAAAAAGT...

CDS

Download CDS FASTA

1458 bp · LXL04_005049|LXL04_005049|OH1004|CDS

ATGGAGTTGGGTCCCATTCTTGATGTTCTTGACAAGAAAACCATTTTGGTCACTGGCGCTACTGGTTTTCTGGCAAAAATTTTCGTGGAGAAGATACTTAGAGTTCAACCAAATGTGAAGAAGCTATATCTTCTTGTGAGAGCAACTGATGCCAAGTCCGCCTTACAACGCTTCAACACCGAGGTAGTAGCAACGGACTTGTTTAAAGTCCTGAAAGAGAAGTACCATACAAACCTGCCAAACTTTCTATCCGAAAAAGT...

Protein

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485 aa · LXL04_005049|LXL04_005049|OH1004|PROTEIN

MELGPILDVLDKKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLVRATDAKSALQRFNTEVVATDLFKVLKEKYHTNLPNFLSEKVILVPGDITCENLGVKDSSLKEQMWRDVEVVVNAAASTNFNERYDVALAINTFGAKFVSDFGKKCINIKLLLHVSTAYVSRENSGVILETPCHLGEILDINYEKKVTEDKLKVLGSDHNATEESIKLAMKDLGMQRANHYGWSNTYVFTKALGEMTLQHSKGDTPLVILRPTII...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_005049`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_005049

Location Chr01:153728193-153732635 (-)

Description Similar to Alcohol-forming fatty acyl-CoA reductase

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g33790`	Catalyzes the reduction of fatty acyl-CoA to fatty alcohols.	CER4 encodes an alcohol-forming fatty acyl-coenzyme A reductase involved in cuticular wax production in Arabidopsis.2006 · DOI: 10.1104/pp.106.086785
`At3g44540`	Catalyzes the reduction of fatty acyl-CoA to fatty alcohols.	Three Arabidopsis fatty acyl-coenzyme A reductases, FAR1, FAR4, and FAR5, generate primary fatty alcohols associated with suberin deposition.2010 · DOI: 10.1104/pp.110.158238 Identification of an Arabidopsis fatty alcohol:caffeoyl-Coenzyme A acyltransferase required for the synthesis of alkyl hydroxycinnamates in root waxes.2012 · DOI: 10.1104/pp.112.201822
`At5g22500`	Catalyzes the reduction of fatty acyl-CoA to fatty alcohols.	Three Arabidopsis fatty acyl-coenzyme A reductases, FAR1, FAR4, and FAR5, generate primary fatty alcohols associated with suberin deposition.2010 · DOI: 10.1104/pp.110.158238 Identification of an Arabidopsis fatty alcohol:caffeoyl-Coenzyme A acyltransferase required for the synthesis of alkyl hydroxycinnamates in root waxes.2012 · DOI: 10.1104/pp.112.201822
`At3g44550`	Catalyzes the reduction of fatty acyl-CoA to fatty alcohols.	Three Arabidopsis fatty acyl-coenzyme A reductases, FAR1, FAR4, and FAR5, generate primary fatty alcohols associated with suberin deposition.2010 · DOI: 10.1104/pp.110.158238 Identification of an Arabidopsis fatty alcohol:caffeoyl-Coenzyme A acyltransferase required for the synthesis of alkyl hydroxycinnamates in root waxes.2012 · DOI: 10.1104/pp.112.201822 Identification of amino acids conferring chain length substrate specificities on fatty alcohol-forming reductases FAR5 and FAR8 from Arabidopsis thaliana.2013 · DOI: 10.1074/jbc.m113.499715

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_005049 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009611 response to wounding Biological Process

GO:0009651 response to salt stress Biological Process

GO:0010025 wax biosynthetic process Biological Process

GO:0010345 suberin biosynthetic process Biological Process

GO:0035336 long-chain fatty-acyl-CoA metabolic process Biological Process

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0080019 alcohol-forming very long-chain fatty acyl-CoA reductase activity Molecular Function

GO:0102965 alcohol-forming long-chain fatty acyl-CoA reductase activity Molecular Function

KEGG gene cross-reference

ag:AAD38039

ath:AT3G44540

ath:AT3G44550

ath:AT4G33790

ath:AT5G22500

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.284

Rank 1 · LXL04_005049 · OH-1004

Peroxisome0.228

Rank 2 · LXL04_005049 · OH-1004

Cytoplasm0.168

Rank 3 · LXL04_005049 · OH-1004

Mitochondrion0.128

Rank 4 · LXL04_005049 · OH-1004

Cell membrane0.077

Rank 5 · LXL04_005049 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07993.19NAD_binding_417-313 aa

PF03015.25Sterile387-485 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_005049	`PF07993.19`	NAD_binding_4	17	313	6.5e-70	235.9
LXL04_005049	`PF03015.25`	Sterile	387	485	1.5e-14	54.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q93ZB9`	Arabidopsis thaliana	Fatty acyl-CoA reductase 3	53.252%	Swiss-Prot	strong database homology
`Q9LXN3`	Arabidopsis thaliana	Probable fatty acyl-CoA reductase 4	50.000%	Swiss-Prot	strong database homology
`Q39152`	Arabidopsis thaliana	Fatty acyl-CoA reductase 1	49.278%	Swiss-Prot	moderate database homology
`Q0WRB0`	Arabidopsis thaliana	Probable fatty acyl-CoA reductase 5	49.095%	Swiss-Prot	moderate database homology

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