TkA01G079830 | RubberDandelionOmics

Gene overview

TkA01G079830

Reference: TK1151 Chr: Chr01 Coordinates: 20428316-20429411 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

717 bp · TkA01G079830|TK1151|cDNA

ATGTCGATTCAAGATCCAGGATTCTTGCGTAGAGGGCCTTGGCTCGATGAAGAAGACAACAGATTGACTACCACTGTTGGGGAATTAGGTGAAAAACATTGGGATGCTTTGGCTAAATCATCAGGTTTGAGGAGAAGTGGAAAAAGTTGTCGGCTCAGGTGGAAGAATTATCTTCGACCGAATTTAAAGCATGGTGATATCACACATGAAGAAGAACACACCATTCTTAATCTTCAGAAACAATGGGGCAACAAGTGGTC...

CDS

Download CDS FASTA

717 bp · TkA01G079830|TK1151|CDS

ATGTCGATTCAAGATCCAGGATTCTTGCGTAGAGGGCCTTGGCTCGATGAAGAAGACAACAGATTGACTACCACTGTTGGGGAATTAGGTGAAAAACATTGGGATGCTTTGGCTAAATCATCAGGTTTGAGGAGAAGTGGAAAAAGTTGTCGGCTCAGGTGGAAGAATTATCTTCGACCGAATTTAAAGCATGGTGATATCACACATGAAGAAGAACACACCATTCTTAATCTTCAGAAACAATGGGGCAACAAGTGGTC...

Protein

Download Protein FASTA

238 aa · TkA01G079830|TK1151|PROTEIN

MSIQDPGFLRRGPWLDEEDNRLTTTVGELGEKHWDALAKSSGLRRSGKSCRLRWKNYLRPNLKHGDITHEEEHTILNLQKQWGNKWSRIAKRLPGRTDNEIKNYWRSHLKGKAEAQPECLKGIEEDMKQDFMTPKCDRISFDHVGESSMSDKEDFFGISSSGTTEQYCDMNALGSGSPYESRMSDLISSCCWQSDEIKHHEEYGMGMFPCFSEIGSSFEEESKTHGVWDLWSPIWELG

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G079830`
TK1151 ID	TkA01G079830
OH-1004 ID	LXL04_005116
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.600
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G079830

Location Chr01:20428316-20429411 (+)

Description Similar to MYB27: Transcription factor MYB27

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g53200`	Transcription factor MYB27.	No verified direct reference in this release
`At5g59780`	Transcription factor.	No verified direct reference in this release
`At3g46130`	Transcription factor.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os11g0700500`	Transcription factor.	No verified direct reference in this release
`Os12g0567300`	Transcription factor.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_005116 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0009646 response to absence of light Biological Process

GO:0009753 response to jasmonic acid Biological Process

GO:0035865 cellular response to potassium ion Biological Process

GO:0043266 regulation of potassium ion transport Biological Process

GO:0051607 defense response to virus Biological Process

GO:0098586 cellular response to virus Biological Process

GO:0005634 nucleus Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

GO:0003677 DNA binding Molecular Function

GO:0003700 DNA-binding transcription factor activity Molecular Function

KEGG gene cross-reference

ath:AT3G53200

ath:AT5G59780

dosa:Os11g0684000

dosa:Os11g0700500

dosa:Os12g0567300

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.964

Rank 1 · TkA01G079830 · TK1151

Cytoplasm0.110

Rank 2 · TkA01G079830 · TK1151

Cell membrane0.024

Rank 3 · TkA01G079830 · TK1151

Endoplasmic reticulum0.012

Rank 4 · TkA01G079830 · TK1151

Plastid0.011

Rank 5 · TkA01G079830 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00249Myb_DNA-binding11-58 aa

PF13921Myb_DNA-bind_614-73 aa

PF10545MADF_DNA_bdg31-56 aa

PF00249Myb_DNA-binding65-109 aa

PF13921Myb_DNA-bind_668-114 aa

PF10545MADF_DNA_bdg79-107 aa

PF10545MADF_DNA_bdg113-136 aa

PF00249Myb_DNA-binding197-217 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G079830	`PF00249`	Myb_DNA-binding	11	58	9.2e-29	100.0
TkA01G079830	`PF13921`	Myb_DNA-bind_6	14	73	1.8e-18	67.2
TkA01G079830	`PF10545`	MADF_DNA_bdg	31	56	0.17	13.0
TkA01G079830	`PF00249`	Myb_DNA-binding	65	109	9.2e-29	100.0
TkA01G079830	`PF13921`	Myb_DNA-bind_6	68	114	1.8e-18	67.2
TkA01G079830	`PF10545`	MADF_DNA_bdg	79	107	0.17	13.0
TkA01G079830	`PF10545`	MADF_DNA_bdg	113	136	0.17	13.0
TkA01G079830	`PF00249`	Myb_DNA-binding	197	217	9.2e-29	100.0
TkA01G079830	`PF13921`	Myb_DNA-bind_6	199	219	1.8e-18	67.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SCP1`	Arabidopsis thaliana	sp\|Q9SCP1\|MYB27_ARATH Transcription factor MYB27	46.300%	Swiss-Prot	Medium
`Q4JL84`	Arabidopsis thaliana	sp\|Q4JL84\|MYB59_ARATH Transcription factor MYB59	58.100%	Swiss-Prot	Low
`Q9LX82`	Arabidopsis thaliana	sp\|Q9LX82\|MYB48_ARATH Transcription factor MYB48	58.100%	Swiss-Prot	Low
`Q53NK6`	Oryza sativa subsp. japonica	sp\|Q53NK6\|MYBA1_ORYSJ Myb-related protein MYBAS1	61.300%	Swiss-Prot	Low
`Q4JL76`	Oryza sativa subsp. japonica	sp\|Q4JL76\|MYBA2_ORYSJ Myb-related protein MYBAS2	61.300%	Swiss-Prot	Low

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