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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G067160
Reference: TK1151 Chr: Chr01 Coordinates: 17179995-17182839 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2431 bp · TkA01G067160|TK1151|cDNA

TACATAGTTACGCCTCCATTTATATATAAACCCACCACCTGACCCCCCCTTCCGACAATAACATATGCGTACGTCAACCATTCCCATTTTCCCTCTCCTTTTTGCCCTAAATTCACTAGGGTTTTCTCCATCTCTCATGATCCCTCATCAATTCTGTTGCATTCATCGTTTACACATCTATTGATTGTCTTATTATCTTTGATAGCTGTTGTTTTCTCCCTTTTTACTCTCATTAGAGAGTTTTTGCTGCTCGGATTTGC...

CDS

Download CDS FASTA

1620 bp · TkA01G067160|TK1151|CDS

ATGCAGAAACTCGTCGCTTACAGTGGGGAAAACGTTGATTTTTCTCATGGGAAGTCAATGTACAAAAACCCAATGGAATCTGTTATATTCTCACCTCTCATCTACTCCATACCTTCCAAAAGATCCAGAATCCACGCCCCATTTCCATTCACTCACCAAATCTTCAAAAAACAAAAAACCACAATCGAAATCCTTCCAGACGAATGCCTATTTGAGATCTTCAAACGTCTGTACGGAACCCAAGAAAGAAGCTCATGTGC...

Protein

Download Protein FASTA

539 aa · TkA01G067160|TK1151|PROTEIN

MQKLVAYSGENVDFSHGKSMYKNPMESVIFSPLIYSIPSKRSRIHAPFPFTHQIFKKQKTTIEILPDECLFEIFKRLYGTQERSSCASVSKHWLNLLSTIHSHEFTNSPTQTSNKSRFLQGKKATDVRLSAIAIGTNSQLGSLSINGNKVNGVTNFGLKAIANGCPSLKNLSLSNLSSISDEGIIEISKNCRNLEKIDFSQIPISNKSLISIAKNCPKLKSISVTNCPQVTDEGITTLLSSLTYSLMKLKLESLNISDMS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G067160
TK1151 IDTkA01G067160
OH-1004 IDLXL04_005314
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.000
Protein coverage (%)TK1151 88.497 / OH-1004 99.375
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G067160
LocationChr01:17179995-17182839 (-)
DescriptionSimilar to EBF1: EIN3-binding F-box protein 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g25490 Component of SCF(EBF1) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins (probably including EIN3 and EIL1).
EIN3-dependent regulation of plant ethylene hormone signaling by two arabidopsis F box proteins: EBF1 and EBF2.2003 · DOI: 10.1016/s0092-8674(03)00968-1
At5g25350 Component of SCF(EBF1) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins (probably including EIN3 and EIL1).
EIN3-dependent regulation of plant ethylene hormone signaling by two arabidopsis F box proteins: EBF1 and EBF2.2003 · DOI: 10.1016/s0092-8674(03)00968-1
At5g67250 Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_005314 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006289 nucleotide-excision repair Biological Process
GO:0006511 ubiquitin-dependent protein catabolic process Biological Process
GO:0009723 response to ethylene Biological Process
GO:0009873 ethylene-activated signaling pathway Biological Process
GO:0010105 negative regulation of ethylene-activated signaling pathway Biological Process
GO:0010225 response to UV-C Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0019005 SCF ubiquitin ligase complex Cellular Component
KEGG gene cross-reference
ath:AT2G25490
ath:AT4G15475
ath:AT5G25350
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.860
Rank 1 · TkA01G067160 · TK1151
Cytoplasm0.111
Rank 2 · TkA01G067160 · TK1151
Plastid0.035
Rank 3 · TkA01G067160 · TK1151
Cell membrane0.031
Rank 4 · TkA01G067160 · TK1151
Mitochondrion0.018
Rank 5 · TkA01G067160 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12937F-box-like63-98 aa
PF00646F-box63-100 aa
PF27089PRAME_C123-150 aa
PF25372LRR_FBXL15133-241 aa
PF27087LRR_TMOD-LMOD133-193 aa
PF00560LRR_1140-153 aa
PF12799LRR_4142-180 aa
PF23622LRR_At1g61320_AtMIF1148-244 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G067160PF12937F-box-like63982.9e-0627.7
TkA01G067160PF00646F-box631000.001119.5
TkA01G067160PF27089PRAME_C1231504.66.9
TkA01G067160PF25372LRR_FBXL151332415.8e-30104.9
TkA01G067160PF27087LRR_TMOD-LMOD1331930.004717.3
TkA01G067160PF00560LRR_11401533.88.8
TkA01G067160PF12799LRR_41421809.1e-0936.0
TkA01G067160PF23622LRR_At1g61320_AtMIF11482440.311.2
TkA01G067160PF11171DUF29581501830.0004621.2
TkA01G067160PF13516LRR_61511621.8e-0937.6
TkA01G067160PF29594LRR_SKP21553313.2e-1660.1
TkA01G067160PF24048LRR_NXF1-51572040.8210.0
TkA01G067160PF28505DUF1699_N1611730.002118.4
TkA01G067160PF24758LRR_At5g563701632280.0006220.2
TkA01G067160PF13516LRR_61651871.8e-0937.6
TkA01G067160PF12799LRR_41662049.1e-0936.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SKK0Arabidopsis thalianasp|Q9SKK0|EBF1_ARATH EIN3-binding F-box protein 140.900%Swiss-ProtMedium
Q708Y0Arabidopsis thalianasp|Q708Y0|EBF2_ARATH EIN3-binding F-box protein 236.600%Swiss-ProtMedium
Q9FE83Arabidopsis thalianasp|Q9FE83|SKIP2_ARATH F-box protein SKIP222.300%Swiss-ProtLow

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