TkA01G048870 | RubberDandelionOmics

Gene overview

TkA01G048870

Reference: TK1151 Chr: Chr01 Coordinates: 12611324-12612141 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

488 bp · TkA01G048870|TK1151|cDNA

CGTTTATTCACCAAAATTTGAGACTGGTGGAGAGTTTTGGCCAATCGTGCACAATTCCACAGTGTTTTCACTGATATTGATGCACATGATTGCTGTGGGGATATTCGGTCTGAAGAAGCTTCCATTGGCTTCCAGTTTAACTCTTCCACTTCCACTTCTCACTCTTTTGTTCAATAACTACTGCCGAAAACGCTTCCTTCCAGTTTTCAAAGGCTATCCTGCTGAGTTGATGATTAAAAAAGACAGACGTGACGAAAACG...

CDS

Download CDS FASTA

306 bp · TkA01G048870|TK1151|CDS

ATGCACATGATTGCTGTGGGGATATTCGGTCTGAAGAAGCTTCCATTGGCTTCCAGTTTAACTCTTCCACTTCCACTTCTCACTCTTTTGTTCAATAACTACTGCCGAAAACGCTTCCTTCCAGTTTTCAAAGGCTATCCTGCTGAGTTGATGATTAAAAAAGACAGACGTGACGAAAACGACCCTGCATTATCTCATTTCCATGAGAAACTAATCACAGCGTATCAAGATCCAGCTTTGAAGCCCATCCAATTTTCTAC...

Protein

Download Protein FASTA

101 aa · TkA01G048870|TK1151|PROTEIN

MHMIAVGIFGLKKLPLASSLTLPLPLLTLLFNNYCRKRFLPVFKGYPAELMIKKDRRDENDPALSHFHEKLITAYQDPALKPIQFSTRTDSHNSPLLASQT

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G048870`
TK1151 ID	TkA01G048870
OH-1004 ID	LXL04_006326
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 13.289 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G048870

Location Chr01:12611324-12612141 (-)

Description Similar to HYP1: CSC1-like protein HYP1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g69450`	Acts as an osmosensitive calcium-permeable cation channel.	No verified direct reference in this release
`At3g01100`	Acts as an osmosensitive calcium-permeable cation channel.	No verified direct reference in this release
`At1g10090`	Acts as an osmosensitive calcium-permeable cation channel.	No verified direct reference in this release
`At1g58520`	Acts as an osmosensitive calcium-permeable cation channel.	No verified direct reference in this release
`At3g54510`	Acts as an osmosensitive calcium-permeable cation channel.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_006326 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006812 monoatomic cation transport Biological Process

GO:0007231 osmosensory signaling pathway Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0005227 calcium-activated cation channel activity Molecular Function

GO:0008381 mechanosensitive monoatomic ion channel activity Molecular Function

GO:0042802 identical protein binding Molecular Function

KEGG gene cross-reference

ath:AT1G10090

ath:AT1G58520

ath:AT1G69450

ath:AT3G01100

ath:AT4G22120

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.334

Rank 1 · TkA01G048870 · TK1151

Mitochondrion0.333

Rank 2 · TkA01G048870 · TK1151

Nucleus0.267

Rank 3 · TkA01G048870 · TK1151

Cell membrane0.089

Rank 4 · TkA01G048870 · TK1151

Extracellular0.067

Rank 5 · TkA01G048870 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`F4I248`	Arabidopsis thaliana	sp\|F4I248\|OSC24_ARATH Hyperosmolality-gated Ca2+ permeable channel 2.4	53.500%	Swiss-Prot	High
`Q8GUH7`	Arabidopsis thaliana	sp\|Q8GUH7\|OSC23_ARATH Hyperosmolality-gated Ca2+ permeable channel 2.3	57.000%	Swiss-Prot	High
`Q94A87`	Arabidopsis thaliana	sp\|Q94A87\|OSC22_ARATH Hyperosmolality-gated Ca2+ permeable channel 2.2	51.400%	Swiss-Prot	High
`F4IBD7`	Arabidopsis thaliana	sp\|F4IBD7\|OSC21_ARATH Hyperosmolality-gated Ca2+ permeable channel 2.1	42.400%	Swiss-Prot	Medium
`F4JCY2`	Arabidopsis thaliana	sp\|F4JCY2\|OSC25_ARATH Hyperosmolality-gated Ca2+ permeable channel 2.5	35.400%	Swiss-Prot	Medium

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